Cargando…

Mining miRNAs' Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions

PURPOSE: To mine miR expression in glioma based on the Gene Expression Omnibus (GEO) database and to explore its effects on biological functions. METHODS: Differentially expressed miRs in glioma-related chips were found out based on the GEO database. Fifty patients with glioma treated in our hospita...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Ke, Zhang, Qi, Niu, Duan, Xing, Hailong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7576330/
https://www.ncbi.nlm.nih.gov/pubmed/33102581
http://dx.doi.org/10.1155/2020/5637864
_version_ 1783597998308065280
author Li, Ke
Zhang, Qi
Niu, Duan
Xing, Hailong
author_facet Li, Ke
Zhang, Qi
Niu, Duan
Xing, Hailong
author_sort Li, Ke
collection PubMed
description PURPOSE: To mine miR expression in glioma based on the Gene Expression Omnibus (GEO) database and to explore its effects on biological functions. METHODS: Differentially expressed miRs in glioma-related chips were found out based on the GEO database. Fifty patients with glioma treated in our hospital from February 2012 to July 2013 (observation group, OG) and a further 50 healthy people undergoing physical examinations (control group, CG) were enrolled. miR-873-5p expression in serum and in U87, T98G, U251, LN-229, and HEK-293T cells was tested by qRT-PCR. T98G and U251 cells were transfected with miR-873-5p-mimics and miR-NC sequences. The expression in the two cells was also tested by qRT-PCR. The proliferation, invasion, and apoptosis of the transfected cells were, respectively, tested by MTT assay, Transwell, and flow cytometry. The patients were followed up for 5 years to observe their survival. RESULTS: miR-873-5p expression in OG was remarkably higher than that in CG (p < 0.001). miR-873-5p was closely correlated with the tumor diameter, lymph node metastasis, and TNM staging of the patients (p < 0.05). According to the plotted receiver operating characteristic (ROC) curves, the areas under the curves (AUCs) of miR-873-5p for diagnosing the disease, tumor diameter, lymph node metastasis, and TNM staging were 0.842, 0.706, 0.865, and 0.793, respectively. The 5-year and recurrence-free survival rates in the low expression group were lower than those in the high expression group. According to multivariate Cox regression analysis, tumor diameter, lymph node metastasis, and miR-873-5p were independent prognostic factors for the disease. After transfection, compared with those in the miR-NC group, T98G and U251 cells in the miR-873-5p-mimic group had remarkably higher miR-873-5p expression (p < 0.05), remarkably lower proliferation and invasion rates (p < 0.05), and a remarkably higher apoptotic rate (p < 0.05). CONCLUSIONS: miR-873-5p can inhibit glioma cells to proliferate and invade, and promote their apoptosis, so it is expected to become a potential diagnostic index and therapeutic target for glioma.
format Online
Article
Text
id pubmed-7576330
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-75763302020-10-22 Mining miRNAs' Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions Li, Ke Zhang, Qi Niu, Duan Xing, Hailong Biomed Res Int Research Article PURPOSE: To mine miR expression in glioma based on the Gene Expression Omnibus (GEO) database and to explore its effects on biological functions. METHODS: Differentially expressed miRs in glioma-related chips were found out based on the GEO database. Fifty patients with glioma treated in our hospital from February 2012 to July 2013 (observation group, OG) and a further 50 healthy people undergoing physical examinations (control group, CG) were enrolled. miR-873-5p expression in serum and in U87, T98G, U251, LN-229, and HEK-293T cells was tested by qRT-PCR. T98G and U251 cells were transfected with miR-873-5p-mimics and miR-NC sequences. The expression in the two cells was also tested by qRT-PCR. The proliferation, invasion, and apoptosis of the transfected cells were, respectively, tested by MTT assay, Transwell, and flow cytometry. The patients were followed up for 5 years to observe their survival. RESULTS: miR-873-5p expression in OG was remarkably higher than that in CG (p < 0.001). miR-873-5p was closely correlated with the tumor diameter, lymph node metastasis, and TNM staging of the patients (p < 0.05). According to the plotted receiver operating characteristic (ROC) curves, the areas under the curves (AUCs) of miR-873-5p for diagnosing the disease, tumor diameter, lymph node metastasis, and TNM staging were 0.842, 0.706, 0.865, and 0.793, respectively. The 5-year and recurrence-free survival rates in the low expression group were lower than those in the high expression group. According to multivariate Cox regression analysis, tumor diameter, lymph node metastasis, and miR-873-5p were independent prognostic factors for the disease. After transfection, compared with those in the miR-NC group, T98G and U251 cells in the miR-873-5p-mimic group had remarkably higher miR-873-5p expression (p < 0.05), remarkably lower proliferation and invasion rates (p < 0.05), and a remarkably higher apoptotic rate (p < 0.05). CONCLUSIONS: miR-873-5p can inhibit glioma cells to proliferate and invade, and promote their apoptosis, so it is expected to become a potential diagnostic index and therapeutic target for glioma. Hindawi 2020-10-10 /pmc/articles/PMC7576330/ /pubmed/33102581 http://dx.doi.org/10.1155/2020/5637864 Text en Copyright © 2020 Ke Li et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Li, Ke
Zhang, Qi
Niu, Duan
Xing, Hailong
Mining miRNAs' Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions
title Mining miRNAs' Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions
title_full Mining miRNAs' Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions
title_fullStr Mining miRNAs' Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions
title_full_unstemmed Mining miRNAs' Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions
title_short Mining miRNAs' Expressions in Glioma Based on GEO Database and Their Effects on Biological Functions
title_sort mining mirnas' expressions in glioma based on geo database and their effects on biological functions
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7576330/
https://www.ncbi.nlm.nih.gov/pubmed/33102581
http://dx.doi.org/10.1155/2020/5637864
work_keys_str_mv AT like miningmirnasexpressionsingliomabasedongeodatabaseandtheireffectsonbiologicalfunctions
AT zhangqi miningmirnasexpressionsingliomabasedongeodatabaseandtheireffectsonbiologicalfunctions
AT niuduan miningmirnasexpressionsingliomabasedongeodatabaseandtheireffectsonbiologicalfunctions
AT xinghailong miningmirnasexpressionsingliomabasedongeodatabaseandtheireffectsonbiologicalfunctions