Cargando…

Implementation of a Cohort Retrieval System for Clinical Data Repositories Using the Observational Medical Outcomes Partnership Common Data Model: Proof-of-Concept System Validation

BACKGROUND: Widespread adoption of electronic health records has enabled the secondary use of electronic health record data for clinical research and health care delivery. Natural language processing techniques have shown promise in their capability to extract the information embedded in unstructure...

Descripción completa

Detalles Bibliográficos
Autores principales:	Liu, Sijia, Wang, Yanshan, Wen, Andrew, Wang, Liwei, Hong, Na, Shen, Feichen, Bedrick, Steven, Hersh, William, Liu, Hongfang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	JMIR Publications 2020
Materias:	Original Paper
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7576539/ https://www.ncbi.nlm.nih.gov/pubmed/33021486 http://dx.doi.org/10.2196/17376

Ejemplares similares

Test collections for electronic health record-based clinical information retrieval
por: Wang, Yanshan, et al.
Publicado: (2019)

Evaluation of patient-level retrieval from electronic health record data for a cohort discovery task
por: Chamberlin, Steven R, et al.
Publicado: (2020)

Recommending Education Materials for Diabetic Questions Using Information Retrieval Approaches
por: Zeng, Yuqun, et al.
Publicado: (2017)

Utilization of Electronic Medical Records and Biomedical Literature to Support the Diagnosis of Rare Diseases Using Data Fusion and Collaborative Filtering Approaches
por: Shen, Feichen, et al.
Publicado: (2018)

Rare disease knowledge enrichment through a data-driven approach
por: Shen, Feichen, et al.
Publicado: (2019)

Systematic Analysis of Free-Text Family History in Electronic Health Record
por: Wang, Yanshan, et al.
Publicado: (2017)

Family History Extraction From Synthetic Clinical Narratives Using Natural Language Processing: Overview and Evaluation of a Challenge Data Set and Solutions for the 2019 National NLP Clinical Challenges (n2c2)/Open Health Natural Language Processing (OHNLP) Competition
por: Shen, Feichen, et al.
Publicado: (2021)

Integrating Structured and Unstructured EHR Data Using an FHIR-based Type System: A Case Study with Medication Data
por: Hong, Na, et al.
Publicado: (2018)

A clinical text classification paradigm using weak supervision and deep representation
por: Wang, Yanshan, et al.
Publicado: (2019)

Discovering associations between problem list and practice setting
por: Wang, Liwei, et al.
Publicado: (2019)

Extracting chemical–protein relations using attention-based neural networks
por: Liu, Sijia, et al.
Publicado: (2018)

Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology
por: Shen, Feichen, et al.
Publicado: (2017)

Detecting Pharmacovigilance Signals Combining Electronic Medical Records With Spontaneous Reports: A Case Study of Conventional Disease-Modifying Antirheumatic Drugs for Rheumatoid Arthritis
por: Wang, Liwei, et al.
Publicado: (2018)

Detecting Lifestyle Risk Factors for Chronic Kidney Disease With Comorbidities: Association Rule Mining Analysis of Web-Based Survey Data
por: Peng, Suyuan, et al.
Publicado: (2019)

Natural language processing for populating lung cancer clinical research data
por: Wang, Liwei, et al.
Publicado: (2019)

The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era
por: Wen, Andrew, et al.
Publicado: (2023)

LifeSeeker: an interactive concept-based retrieval system for lifelog data
por: Nguyen, Thao-Nhu, et al.
Publicado: (2023)

The 2019 n2c2/OHNLP Track on Clinical Semantic Textual Similarity: Overview
por: Wang, Yanshan, et al.
Publicado: (2020)

An Aberration Detection-Based Approach for Sentinel Syndromic Surveillance of COVID-19 and Other Novel Influenza-Like Illnesses
por: Wen, Andrew, et al.
Publicado: (2020)

An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses
por: Wen, Andrew, et al.
Publicado: (2021)

Selected articles from the BioCreative/OHNLP challenge 2018
por: Liu, Sijia, et al.
Publicado: (2019)

Don't Let Perfect Be the Enemy of Good: A Proof of Concept for a Custom National Data Repository of Quality Measures for Free and Charitable Clinics
por: Darnell, Julie S., et al.
Publicado: (2022)

Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts
por: Wang, Yanshan, et al.
Publicado: (2017)

Salience of Medical Concepts of Inside Clinical Texts and Outside Medical Records for Referred Cardiovascular Patients
por: Moon, Sungrim, et al.
Publicado: (2019)

Developing a scalable FHIR-based clinical data normalization pipeline for standardizing and integrating unstructured and structured electronic health record data
por: Hong, Na, et al.
Publicado: (2019)

Cellular phenotype database: a repository for systems microscopy data
por: Kirsanova, Catherine, et al.
Publicado: (2015)

Cohort profile: the East London Health and Care Partnership Data Repository: using novel integrated data to support commissioning and research
por: Ronaldson, Amy, et al.
Publicado: (2020)

CNSA: a data repository for archiving omics data
por: Guo, Xueqin, et al.
Publicado: (2020)

The security data lake: leveraging big data technologies to build a common data repository for security
por: Marty, Raffael
Publicado: (2015)

Populating Physician Biographical Pages Based on EMR Data
por: Shen, Feichen, et al.
Publicado: (2017)

Representation of Time-Relevant Common Data Elements in the Cancer Data Standards Repository: Statistical Evaluation of an Ontological Approach
por: Chen, Henry W, et al.
Publicado: (2018)

A Frequency-based Strategy of Obtaining Sentences from Clinical Data Repository for Crowdsourcing
por: Li, Dingcheng, et al.
Publicado: (2015)

Adopting a learning pathway approach to patient partnership in telehealth: A proof of concept
por: Jackson, Mathieu, et al.
Publicado: (2023)

Aligned-Layer Text Search in Clinical Notes
por: Wu, Stephen, et al.
Publicado: (2017)

SATORI: a system for ontology-guided visual exploration of biomedical data repositories
por: Lekschas, Fritz, et al.
Publicado: (2018)

PO2RDF: representation of real-world data for precision oncology using resource description framework
por: Zhao, Yiqing, et al.
Publicado: (2022)

TREC-COVID: rationale and structure of an information retrieval shared task for COVID-19
por: Roberts, Kirk, et al.
Publicado: (2020)

Correlating Lab Test Results in Clinical Notes with Structured Lab Data: A Case Study in HbA1c and Glucose
por: Liu, Sijia, et al.
Publicado: (2017)

A repository for the publication and sharing of heterogeneous materials data
por: Gong, Haiyan, et al.
Publicado: (2022)

A data citation roadmap for scholarly data repositories
por: Fenner, Martin, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_02arju329thh43svh4t1kk1asa