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Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita

Quantitative real-time polymerase chain reaction (qPT-PCR) is commonly used to analyze gene expression, however, the accuracy of the normalized results is affected by the expression stability of reference genes. Holotrichia oblita (Coleoptera: Scarabaeidae) causes serious damage to crops. Reliable r...

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Detalles Bibliográficos
Autores principales: Xie, Minghui, Zhong, Yongzhi, Lin, Lulu, Zhang, Guangling, Su, Weihua, Ni, Wanli, Qu, Mingjing, Chen, Haoliang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7577503/
https://www.ncbi.nlm.nih.gov/pubmed/33085726
http://dx.doi.org/10.1371/journal.pone.0240972
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author Xie, Minghui
Zhong, Yongzhi
Lin, Lulu
Zhang, Guangling
Su, Weihua
Ni, Wanli
Qu, Mingjing
Chen, Haoliang
author_facet Xie, Minghui
Zhong, Yongzhi
Lin, Lulu
Zhang, Guangling
Su, Weihua
Ni, Wanli
Qu, Mingjing
Chen, Haoliang
author_sort Xie, Minghui
collection PubMed
description Quantitative real-time polymerase chain reaction (qPT-PCR) is commonly used to analyze gene expression, however, the accuracy of the normalized results is affected by the expression stability of reference genes. Holotrichia oblita (Coleoptera: Scarabaeidae) causes serious damage to crops. Reliable reference genes in H. oblita are needed for qRT-PCR analysis. Therefore, we evaluated 13 reference genes under biotic and abiotic conditions. RefFinder provided a comprehensive stability ranking, and geNorm suggested the optimal number of reference genes for normalization. RPL13a and RPL18 were the most suitable reference genes for developmental stages, tissues, and temperature treatments; RPL13a and RPS3 were the most suitable for pesticide and photoperiod treatments; RPS18 and RPL18 were the most suitable for the two sexes. We validated the normalized results using odorant-binding protein genes as target genes in different tissues. Compared with the selected suitable reference genes, the expression of OBP1 in antennae, abdomen, and wings, and OBP2 in antennae and wings were overestimated due to the instability of ACTb. These results identified several reliable reference genes in H. oblita for normalization, and are valuable for future molecular studies.
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spelling pubmed-75775032020-10-26 Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita Xie, Minghui Zhong, Yongzhi Lin, Lulu Zhang, Guangling Su, Weihua Ni, Wanli Qu, Mingjing Chen, Haoliang PLoS One Research Article Quantitative real-time polymerase chain reaction (qPT-PCR) is commonly used to analyze gene expression, however, the accuracy of the normalized results is affected by the expression stability of reference genes. Holotrichia oblita (Coleoptera: Scarabaeidae) causes serious damage to crops. Reliable reference genes in H. oblita are needed for qRT-PCR analysis. Therefore, we evaluated 13 reference genes under biotic and abiotic conditions. RefFinder provided a comprehensive stability ranking, and geNorm suggested the optimal number of reference genes for normalization. RPL13a and RPL18 were the most suitable reference genes for developmental stages, tissues, and temperature treatments; RPL13a and RPS3 were the most suitable for pesticide and photoperiod treatments; RPS18 and RPL18 were the most suitable for the two sexes. We validated the normalized results using odorant-binding protein genes as target genes in different tissues. Compared with the selected suitable reference genes, the expression of OBP1 in antennae, abdomen, and wings, and OBP2 in antennae and wings were overestimated due to the instability of ACTb. These results identified several reliable reference genes in H. oblita for normalization, and are valuable for future molecular studies. Public Library of Science 2020-10-21 /pmc/articles/PMC7577503/ /pubmed/33085726 http://dx.doi.org/10.1371/journal.pone.0240972 Text en © 2020 Xie et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Xie, Minghui
Zhong, Yongzhi
Lin, Lulu
Zhang, Guangling
Su, Weihua
Ni, Wanli
Qu, Mingjing
Chen, Haoliang
Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita
title Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita
title_full Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita
title_fullStr Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita
title_full_unstemmed Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita
title_short Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita
title_sort evaluation of reference genes for quantitative real-time pcr normalization in the scarab beetle holotrichia oblita
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7577503/
https://www.ncbi.nlm.nih.gov/pubmed/33085726
http://dx.doi.org/10.1371/journal.pone.0240972
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