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Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita
Quantitative real-time polymerase chain reaction (qPT-PCR) is commonly used to analyze gene expression, however, the accuracy of the normalized results is affected by the expression stability of reference genes. Holotrichia oblita (Coleoptera: Scarabaeidae) causes serious damage to crops. Reliable r...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7577503/ https://www.ncbi.nlm.nih.gov/pubmed/33085726 http://dx.doi.org/10.1371/journal.pone.0240972 |
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author | Xie, Minghui Zhong, Yongzhi Lin, Lulu Zhang, Guangling Su, Weihua Ni, Wanli Qu, Mingjing Chen, Haoliang |
author_facet | Xie, Minghui Zhong, Yongzhi Lin, Lulu Zhang, Guangling Su, Weihua Ni, Wanli Qu, Mingjing Chen, Haoliang |
author_sort | Xie, Minghui |
collection | PubMed |
description | Quantitative real-time polymerase chain reaction (qPT-PCR) is commonly used to analyze gene expression, however, the accuracy of the normalized results is affected by the expression stability of reference genes. Holotrichia oblita (Coleoptera: Scarabaeidae) causes serious damage to crops. Reliable reference genes in H. oblita are needed for qRT-PCR analysis. Therefore, we evaluated 13 reference genes under biotic and abiotic conditions. RefFinder provided a comprehensive stability ranking, and geNorm suggested the optimal number of reference genes for normalization. RPL13a and RPL18 were the most suitable reference genes for developmental stages, tissues, and temperature treatments; RPL13a and RPS3 were the most suitable for pesticide and photoperiod treatments; RPS18 and RPL18 were the most suitable for the two sexes. We validated the normalized results using odorant-binding protein genes as target genes in different tissues. Compared with the selected suitable reference genes, the expression of OBP1 in antennae, abdomen, and wings, and OBP2 in antennae and wings were overestimated due to the instability of ACTb. These results identified several reliable reference genes in H. oblita for normalization, and are valuable for future molecular studies. |
format | Online Article Text |
id | pubmed-7577503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-75775032020-10-26 Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita Xie, Minghui Zhong, Yongzhi Lin, Lulu Zhang, Guangling Su, Weihua Ni, Wanli Qu, Mingjing Chen, Haoliang PLoS One Research Article Quantitative real-time polymerase chain reaction (qPT-PCR) is commonly used to analyze gene expression, however, the accuracy of the normalized results is affected by the expression stability of reference genes. Holotrichia oblita (Coleoptera: Scarabaeidae) causes serious damage to crops. Reliable reference genes in H. oblita are needed for qRT-PCR analysis. Therefore, we evaluated 13 reference genes under biotic and abiotic conditions. RefFinder provided a comprehensive stability ranking, and geNorm suggested the optimal number of reference genes for normalization. RPL13a and RPL18 were the most suitable reference genes for developmental stages, tissues, and temperature treatments; RPL13a and RPS3 were the most suitable for pesticide and photoperiod treatments; RPS18 and RPL18 were the most suitable for the two sexes. We validated the normalized results using odorant-binding protein genes as target genes in different tissues. Compared with the selected suitable reference genes, the expression of OBP1 in antennae, abdomen, and wings, and OBP2 in antennae and wings were overestimated due to the instability of ACTb. These results identified several reliable reference genes in H. oblita for normalization, and are valuable for future molecular studies. Public Library of Science 2020-10-21 /pmc/articles/PMC7577503/ /pubmed/33085726 http://dx.doi.org/10.1371/journal.pone.0240972 Text en © 2020 Xie et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Xie, Minghui Zhong, Yongzhi Lin, Lulu Zhang, Guangling Su, Weihua Ni, Wanli Qu, Mingjing Chen, Haoliang Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita |
title | Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita |
title_full | Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita |
title_fullStr | Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita |
title_full_unstemmed | Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita |
title_short | Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetle Holotrichia oblita |
title_sort | evaluation of reference genes for quantitative real-time pcr normalization in the scarab beetle holotrichia oblita |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7577503/ https://www.ncbi.nlm.nih.gov/pubmed/33085726 http://dx.doi.org/10.1371/journal.pone.0240972 |
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