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Targeted sequence design within the coarse-grained polymer genome

The chemical design of polymers with target structural and/or functional properties represents a grand challenge in materials science. While data-driven design approaches are promising, success with polymers has been limited, largely due to limitations in data availability. Here, we demonstrate the...

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Detalles Bibliográficos
Autores principales: Webb, Michael A., Jackson, Nicholas E., Gil, Phwey S., de Pablo, Juan J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7577717/
https://www.ncbi.nlm.nih.gov/pubmed/33087352
http://dx.doi.org/10.1126/sciadv.abc6216
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author Webb, Michael A.
Jackson, Nicholas E.
Gil, Phwey S.
de Pablo, Juan J.
author_facet Webb, Michael A.
Jackson, Nicholas E.
Gil, Phwey S.
de Pablo, Juan J.
author_sort Webb, Michael A.
collection PubMed
description The chemical design of polymers with target structural and/or functional properties represents a grand challenge in materials science. While data-driven design approaches are promising, success with polymers has been limited, largely due to limitations in data availability. Here, we demonstrate the targeted sequence design of single-chain structure in polymers by combining coarse-grained modeling, machine learning, and model optimization. Nearly 2000 unique coarse-grained polymers are simulated to construct and analyze machine learning models. We find that deep neural networks inexpensively and reliably predict structural properties with limited sequence information as input. By coupling trained ML models with sequential model-based optimization, polymer sequences are proposed to exhibit globular, swollen, or rod-like behaviors, which are verified by explicit simulations. This work highlights the promising integration of coarse-grained modeling with data-driven design and represents a necessary and crucial step toward more complex polymer design efforts.
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spelling pubmed-75777172020-11-02 Targeted sequence design within the coarse-grained polymer genome Webb, Michael A. Jackson, Nicholas E. Gil, Phwey S. de Pablo, Juan J. Sci Adv Research Articles The chemical design of polymers with target structural and/or functional properties represents a grand challenge in materials science. While data-driven design approaches are promising, success with polymers has been limited, largely due to limitations in data availability. Here, we demonstrate the targeted sequence design of single-chain structure in polymers by combining coarse-grained modeling, machine learning, and model optimization. Nearly 2000 unique coarse-grained polymers are simulated to construct and analyze machine learning models. We find that deep neural networks inexpensively and reliably predict structural properties with limited sequence information as input. By coupling trained ML models with sequential model-based optimization, polymer sequences are proposed to exhibit globular, swollen, or rod-like behaviors, which are verified by explicit simulations. This work highlights the promising integration of coarse-grained modeling with data-driven design and represents a necessary and crucial step toward more complex polymer design efforts. American Association for the Advancement of Science 2020-10-21 /pmc/articles/PMC7577717/ /pubmed/33087352 http://dx.doi.org/10.1126/sciadv.abc6216 Text en Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). https://creativecommons.org/licenses/by-nc/4.0/ https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (https://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Research Articles
Webb, Michael A.
Jackson, Nicholas E.
Gil, Phwey S.
de Pablo, Juan J.
Targeted sequence design within the coarse-grained polymer genome
title Targeted sequence design within the coarse-grained polymer genome
title_full Targeted sequence design within the coarse-grained polymer genome
title_fullStr Targeted sequence design within the coarse-grained polymer genome
title_full_unstemmed Targeted sequence design within the coarse-grained polymer genome
title_short Targeted sequence design within the coarse-grained polymer genome
title_sort targeted sequence design within the coarse-grained polymer genome
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7577717/
https://www.ncbi.nlm.nih.gov/pubmed/33087352
http://dx.doi.org/10.1126/sciadv.abc6216
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