Cargando…
Intrinsic molecular vibration and rigorous vibrational assignment of benzene by first-principles molecular dynamics
Vibrational assignment, which establishes the correspondence between vibrational modes and spectral frequencies, is a key step in any spectroscopic study. Due to the lack of experimental technique to directly observe the thermal vibration of atoms, the assignment is usually done by empirical trial-a...
Autor principal: | |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7578012/ https://www.ncbi.nlm.nih.gov/pubmed/33087748 http://dx.doi.org/10.1038/s41598-020-74872-6 |
_version_ | 1783598281974087680 |
---|---|
author | Wang, Shaoqing |
author_facet | Wang, Shaoqing |
author_sort | Wang, Shaoqing |
collection | PubMed |
description | Vibrational assignment, which establishes the correspondence between vibrational modes and spectral frequencies, is a key step in any spectroscopic study. Due to the lack of experimental technique to directly observe the thermal vibration of atoms, the assignment is usually done by empirical trial-and-error method with considerable uncertainty. Here we demonstrate a successful study of intrinsic molecular vibration property based on first-principles molecular dynamics trajectory. A unified approach for calculating and assigning vibrational frequencies is developed and applied to solve some historical issues of benzene vibration. As a major achievement, the experimental frequencies of benzene a(2g) and b(2u) vibrations are reassigned, which breaks a deadlock in contemporary spectroscopic science and removes a cloud over the application of density-functional theory in organic chemistry. This work paves the way for the comprehensive realization of the first-principles spectroscopic research, and provides crucial clues to solve the century-old problems of Kekule resonance, π-deformation, and aromaticity. |
format | Online Article Text |
id | pubmed-7578012 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-75780122020-10-23 Intrinsic molecular vibration and rigorous vibrational assignment of benzene by first-principles molecular dynamics Wang, Shaoqing Sci Rep Article Vibrational assignment, which establishes the correspondence between vibrational modes and spectral frequencies, is a key step in any spectroscopic study. Due to the lack of experimental technique to directly observe the thermal vibration of atoms, the assignment is usually done by empirical trial-and-error method with considerable uncertainty. Here we demonstrate a successful study of intrinsic molecular vibration property based on first-principles molecular dynamics trajectory. A unified approach for calculating and assigning vibrational frequencies is developed and applied to solve some historical issues of benzene vibration. As a major achievement, the experimental frequencies of benzene a(2g) and b(2u) vibrations are reassigned, which breaks a deadlock in contemporary spectroscopic science and removes a cloud over the application of density-functional theory in organic chemistry. This work paves the way for the comprehensive realization of the first-principles spectroscopic research, and provides crucial clues to solve the century-old problems of Kekule resonance, π-deformation, and aromaticity. Nature Publishing Group UK 2020-10-21 /pmc/articles/PMC7578012/ /pubmed/33087748 http://dx.doi.org/10.1038/s41598-020-74872-6 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Wang, Shaoqing Intrinsic molecular vibration and rigorous vibrational assignment of benzene by first-principles molecular dynamics |
title | Intrinsic molecular vibration and rigorous vibrational assignment of benzene by first-principles molecular dynamics |
title_full | Intrinsic molecular vibration and rigorous vibrational assignment of benzene by first-principles molecular dynamics |
title_fullStr | Intrinsic molecular vibration and rigorous vibrational assignment of benzene by first-principles molecular dynamics |
title_full_unstemmed | Intrinsic molecular vibration and rigorous vibrational assignment of benzene by first-principles molecular dynamics |
title_short | Intrinsic molecular vibration and rigorous vibrational assignment of benzene by first-principles molecular dynamics |
title_sort | intrinsic molecular vibration and rigorous vibrational assignment of benzene by first-principles molecular dynamics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7578012/ https://www.ncbi.nlm.nih.gov/pubmed/33087748 http://dx.doi.org/10.1038/s41598-020-74872-6 |
work_keys_str_mv | AT wangshaoqing intrinsicmolecularvibrationandrigorousvibrationalassignmentofbenzenebyfirstprinciplesmoleculardynamics |