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Texture features from computed tomography correlate with markers of severity in acute alcohol-associated hepatitis

The aim of this study was to use texture analysis to establish quantitative CT-based imaging features to predict clinical severity in patients with acute alcohol-associated hepatitis (AAH). A secondary aim was to compare the performance of texture analysis to deep learning. In this study, mathematic...

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Autores principales: Tana, Michele M., McCoy, David, Lee, Briton, Patel, Roshan, Lin, Joseph, Ohliger, Michael A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7578052/
https://www.ncbi.nlm.nih.gov/pubmed/33087739
http://dx.doi.org/10.1038/s41598-020-74599-4
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author Tana, Michele M.
McCoy, David
Lee, Briton
Patel, Roshan
Lin, Joseph
Ohliger, Michael A.
author_facet Tana, Michele M.
McCoy, David
Lee, Briton
Patel, Roshan
Lin, Joseph
Ohliger, Michael A.
author_sort Tana, Michele M.
collection PubMed
description The aim of this study was to use texture analysis to establish quantitative CT-based imaging features to predict clinical severity in patients with acute alcohol-associated hepatitis (AAH). A secondary aim was to compare the performance of texture analysis to deep learning. In this study, mathematical texture features were extracted from CT slices of the liver for 34 patients with a diagnosis of AAH and 35 control patients. Recursive feature elimination using random forest (RFE-RF) was used to identify the best combination of features to distinguish AAH from controls. These features were subsequently used as predictors to determine associated clinical values. To compare machine learning with deep learning approaches, a 2D dense convolutional neural network (CNN) was implemented and trained for the classification task of AAH. RFE-RF identified 23 top features used to classify AAH images, and the subsequent model demonstrated an accuracy of 82.4% in the test set. The deep learning CNN demonstrated an accuracy of 70% in the test set. We show that texture features of the liver are unique in AAH and are candidate quantitative biomarkers that can be used in prospective studies to predict the severity and outcomes of patients with AAH.
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spelling pubmed-75780522020-10-23 Texture features from computed tomography correlate with markers of severity in acute alcohol-associated hepatitis Tana, Michele M. McCoy, David Lee, Briton Patel, Roshan Lin, Joseph Ohliger, Michael A. Sci Rep Article The aim of this study was to use texture analysis to establish quantitative CT-based imaging features to predict clinical severity in patients with acute alcohol-associated hepatitis (AAH). A secondary aim was to compare the performance of texture analysis to deep learning. In this study, mathematical texture features were extracted from CT slices of the liver for 34 patients with a diagnosis of AAH and 35 control patients. Recursive feature elimination using random forest (RFE-RF) was used to identify the best combination of features to distinguish AAH from controls. These features were subsequently used as predictors to determine associated clinical values. To compare machine learning with deep learning approaches, a 2D dense convolutional neural network (CNN) was implemented and trained for the classification task of AAH. RFE-RF identified 23 top features used to classify AAH images, and the subsequent model demonstrated an accuracy of 82.4% in the test set. The deep learning CNN demonstrated an accuracy of 70% in the test set. We show that texture features of the liver are unique in AAH and are candidate quantitative biomarkers that can be used in prospective studies to predict the severity and outcomes of patients with AAH. Nature Publishing Group UK 2020-10-21 /pmc/articles/PMC7578052/ /pubmed/33087739 http://dx.doi.org/10.1038/s41598-020-74599-4 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Tana, Michele M.
McCoy, David
Lee, Briton
Patel, Roshan
Lin, Joseph
Ohliger, Michael A.
Texture features from computed tomography correlate with markers of severity in acute alcohol-associated hepatitis
title Texture features from computed tomography correlate with markers of severity in acute alcohol-associated hepatitis
title_full Texture features from computed tomography correlate with markers of severity in acute alcohol-associated hepatitis
title_fullStr Texture features from computed tomography correlate with markers of severity in acute alcohol-associated hepatitis
title_full_unstemmed Texture features from computed tomography correlate with markers of severity in acute alcohol-associated hepatitis
title_short Texture features from computed tomography correlate with markers of severity in acute alcohol-associated hepatitis
title_sort texture features from computed tomography correlate with markers of severity in acute alcohol-associated hepatitis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7578052/
https://www.ncbi.nlm.nih.gov/pubmed/33087739
http://dx.doi.org/10.1038/s41598-020-74599-4
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