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Agile clinical research: A data science approach to scrumban in clinical medicine

The COVID-19 pandemic has required greater minute-to-minute urgency of patient treatment in Intensive Care Units (ICUs), rendering the use of Randomized Controlled Trials (RCTs) too slow to be effective for treatment discovery. There is a need for agility in clinical research, and the use of data sc...

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Autores principales: Lei, Howard, O’Connell, Ryan, Ehwerhemuepha, Louis, Taraman, Sharief, Feaster, William, Chang, Anthony
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier B.V. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7578702/
https://www.ncbi.nlm.nih.gov/pubmed/33106798
http://dx.doi.org/10.1016/j.ibmed.2020.100009
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author Lei, Howard
O’Connell, Ryan
Ehwerhemuepha, Louis
Taraman, Sharief
Feaster, William
Chang, Anthony
author_facet Lei, Howard
O’Connell, Ryan
Ehwerhemuepha, Louis
Taraman, Sharief
Feaster, William
Chang, Anthony
author_sort Lei, Howard
collection PubMed
description The COVID-19 pandemic has required greater minute-to-minute urgency of patient treatment in Intensive Care Units (ICUs), rendering the use of Randomized Controlled Trials (RCTs) too slow to be effective for treatment discovery. There is a need for agility in clinical research, and the use of data science to develop predictive models for patient treatment is a potential solution. However, rapidly developing predictive models in healthcare is challenging given the complexity of healthcare problems and the lack of regular interaction between data scientists and physicians. Data scientists can spend significant time working in isolation to build predictive models that may not be useful in clinical environments. We propose the use of an agile data science framework based on the Scrumban framework used in software development. Scrumban is an iterative framework, where in each iteration larger problems are broken down into simple do-able tasks for data scientists and physicians. The two sides collaborate closely in formulating clinical questions and developing and deploying predictive models into clinical settings. Physicians can provide feedback or new hypotheses given the performance of the model, and refinement of the model or clinical questions can take place in the next iteration. The rapid development of predictive models can now be achieved with increasing numbers of publicly available healthcare datasets and easily accessible cloud-based data science tools. What is truly needed are data scientist and physician partnerships ensuring close collaboration between the two sides in using these tools to develop clinically useful predictive models to meet the demands of the COVID-19 healthcare landscape.
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spelling pubmed-75787022020-10-22 Agile clinical research: A data science approach to scrumban in clinical medicine Lei, Howard O’Connell, Ryan Ehwerhemuepha, Louis Taraman, Sharief Feaster, William Chang, Anthony Intell Based Med Article The COVID-19 pandemic has required greater minute-to-minute urgency of patient treatment in Intensive Care Units (ICUs), rendering the use of Randomized Controlled Trials (RCTs) too slow to be effective for treatment discovery. There is a need for agility in clinical research, and the use of data science to develop predictive models for patient treatment is a potential solution. However, rapidly developing predictive models in healthcare is challenging given the complexity of healthcare problems and the lack of regular interaction between data scientists and physicians. Data scientists can spend significant time working in isolation to build predictive models that may not be useful in clinical environments. We propose the use of an agile data science framework based on the Scrumban framework used in software development. Scrumban is an iterative framework, where in each iteration larger problems are broken down into simple do-able tasks for data scientists and physicians. The two sides collaborate closely in formulating clinical questions and developing and deploying predictive models into clinical settings. Physicians can provide feedback or new hypotheses given the performance of the model, and refinement of the model or clinical questions can take place in the next iteration. The rapid development of predictive models can now be achieved with increasing numbers of publicly available healthcare datasets and easily accessible cloud-based data science tools. What is truly needed are data scientist and physician partnerships ensuring close collaboration between the two sides in using these tools to develop clinically useful predictive models to meet the demands of the COVID-19 healthcare landscape. Elsevier B.V. 2020-12 2020-10-22 /pmc/articles/PMC7578702/ /pubmed/33106798 http://dx.doi.org/10.1016/j.ibmed.2020.100009 Text en © 2020 Elsevier B.V. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Lei, Howard
O’Connell, Ryan
Ehwerhemuepha, Louis
Taraman, Sharief
Feaster, William
Chang, Anthony
Agile clinical research: A data science approach to scrumban in clinical medicine
title Agile clinical research: A data science approach to scrumban in clinical medicine
title_full Agile clinical research: A data science approach to scrumban in clinical medicine
title_fullStr Agile clinical research: A data science approach to scrumban in clinical medicine
title_full_unstemmed Agile clinical research: A data science approach to scrumban in clinical medicine
title_short Agile clinical research: A data science approach to scrumban in clinical medicine
title_sort agile clinical research: a data science approach to scrumban in clinical medicine
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7578702/
https://www.ncbi.nlm.nih.gov/pubmed/33106798
http://dx.doi.org/10.1016/j.ibmed.2020.100009
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