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How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions?

The number of confirmed cases of COVID-19 is often used as a proxy for the actual number of ground truth COVID-19-infected cases in both public discourse and policy making. However, the number of confirmed cases depends on the testing policy, and it is important to understand how the number of posit...

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Autores principales: Gopalan, Aditya, Tyagi, Himanshu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer India 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7581955/
https://www.ncbi.nlm.nih.gov/pubmed/33110298
http://dx.doi.org/10.1007/s41745-020-00210-4
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author Gopalan, Aditya
Tyagi, Himanshu
author_facet Gopalan, Aditya
Tyagi, Himanshu
author_sort Gopalan, Aditya
collection PubMed
description The number of confirmed cases of COVID-19 is often used as a proxy for the actual number of ground truth COVID-19-infected cases in both public discourse and policy making. However, the number of confirmed cases depends on the testing policy, and it is important to understand how the number of positive cases obtained using different testing policies reveals the unknown ground truth. We develop an agent-based simulation framework in Python that can simulate various testing policies as well as interventions such as lockdown based on them. The interaction between the agents can take into account various communities and mobility patterns. A distinguishing feature of our framework is the presence of another ‘flu’-like illness with symptoms similar to COVID-19, that allows us to model the noise in selecting the pool of patients to be tested. We instantiate our model for the city of Bengaluru in India, using census data to distribute agents geographically, and traffic flow mobility data to model long-distance interactions and mixing. We use the simulation framework to compare the performance of three testing policies: Random Symptomatic Testing (RST), Contact Tracing (CT), and a new Location-Based Testing policy (LBT). We observe that if a sufficient fraction of symptomatic patients come out for testing, then RST can capture the ground truth quite closely even with very few daily tests. However, CT consistently captures more positive cases. Interestingly, our new LBT, which is operationally less intensive than CT, gives performance that is comparable with CT. In another direction, we compare the efficacy of these three testing policies in enabling lockdown, and observe that CT flattens the ground truth curve maximally, followed closely by LBT, and significantly better than RST.
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spelling pubmed-75819552020-10-23 How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions? Gopalan, Aditya Tyagi, Himanshu J Indian Inst Sci Review Article The number of confirmed cases of COVID-19 is often used as a proxy for the actual number of ground truth COVID-19-infected cases in both public discourse and policy making. However, the number of confirmed cases depends on the testing policy, and it is important to understand how the number of positive cases obtained using different testing policies reveals the unknown ground truth. We develop an agent-based simulation framework in Python that can simulate various testing policies as well as interventions such as lockdown based on them. The interaction between the agents can take into account various communities and mobility patterns. A distinguishing feature of our framework is the presence of another ‘flu’-like illness with symptoms similar to COVID-19, that allows us to model the noise in selecting the pool of patients to be tested. We instantiate our model for the city of Bengaluru in India, using census data to distribute agents geographically, and traffic flow mobility data to model long-distance interactions and mixing. We use the simulation framework to compare the performance of three testing policies: Random Symptomatic Testing (RST), Contact Tracing (CT), and a new Location-Based Testing policy (LBT). We observe that if a sufficient fraction of symptomatic patients come out for testing, then RST can capture the ground truth quite closely even with very few daily tests. However, CT consistently captures more positive cases. Interestingly, our new LBT, which is operationally less intensive than CT, gives performance that is comparable with CT. In another direction, we compare the efficacy of these three testing policies in enabling lockdown, and observe that CT flattens the ground truth curve maximally, followed closely by LBT, and significantly better than RST. Springer India 2020-10-23 2020 /pmc/articles/PMC7581955/ /pubmed/33110298 http://dx.doi.org/10.1007/s41745-020-00210-4 Text en © Indian Institute of Science 2020 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Review Article
Gopalan, Aditya
Tyagi, Himanshu
How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions?
title How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions?
title_full How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions?
title_fullStr How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions?
title_full_unstemmed How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions?
title_short How Reliable are Test Numbers for Revealing the COVID-19 Ground Truth and Applying Interventions?
title_sort how reliable are test numbers for revealing the covid-19 ground truth and applying interventions?
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7581955/
https://www.ncbi.nlm.nih.gov/pubmed/33110298
http://dx.doi.org/10.1007/s41745-020-00210-4
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