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Quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer
Background: To investigate quantitative ultrasound (QUS) based higher-order texture derivatives in predicting the response to neoadjuvant chemotherapy (NAC) in patients with locally advanced breast cancer (LABC). Materials and Methods: 100 Patients with LABC were scanned before starting NAC. Five QU...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7584238/ https://www.ncbi.nlm.nih.gov/pubmed/33144919 http://dx.doi.org/10.18632/oncotarget.27742 |
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author | Dasgupta, Archya Brade, Stephen Sannachi, Lakshmanan Quiaoit, Karina Fatima, Kashuf DiCenzo, Daniel Osapoetra, Laurentius O. Saifuddin, Murtuza Trudeau, Maureen Gandhi, Sonal Eisen, Andrea Wright, Frances Look-Hong, Nicole Sadeghi-Naini, Ali Tran, William T. Curpen, Belinda Czarnota, Gregory J. |
author_facet | Dasgupta, Archya Brade, Stephen Sannachi, Lakshmanan Quiaoit, Karina Fatima, Kashuf DiCenzo, Daniel Osapoetra, Laurentius O. Saifuddin, Murtuza Trudeau, Maureen Gandhi, Sonal Eisen, Andrea Wright, Frances Look-Hong, Nicole Sadeghi-Naini, Ali Tran, William T. Curpen, Belinda Czarnota, Gregory J. |
author_sort | Dasgupta, Archya |
collection | PubMed |
description | Background: To investigate quantitative ultrasound (QUS) based higher-order texture derivatives in predicting the response to neoadjuvant chemotherapy (NAC) in patients with locally advanced breast cancer (LABC). Materials and Methods: 100 Patients with LABC were scanned before starting NAC. Five QUS parametric image-types were generated from radio-frequency data over the tumor volume. From each QUS parametric-image, 4 grey level co-occurrence matrix-based texture images were derived (20 QUS-Tex(1)), which were further processed to create texture derivatives (80 QUS-Tex(1)-Tex(2)). Patients were classified into responders and non-responders based on clinical/pathological responses to treatment. Three machine learning algorithms based on linear discriminant (FLD), k-nearest-neighbors (KNN), and support vector machine (SVM) were used for developing radiomic models of response prediction. Results: A KNN-model provided the best results with sensitivity, specificity, accuracy, and area under curve (AUC) of 87%, 81%, 82%, and 0.86, respectively. The most helpful features in separating the two response groups were QUS-Tex(1)-Tex(2) features. The 5-year recurrence-free survival (RFS) calculated for KNN predicted responders and non-responders using QUS-Tex(1)-Tex(2) model were comparable to RFS for the actual response groups. Conclusions: We report the first study demonstrating QUS texture-derivative methods in predicting NAC responses in LABC, which leads to better results compared to using texture features alone. |
format | Online Article Text |
id | pubmed-7584238 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-75842382020-11-02 Quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer Dasgupta, Archya Brade, Stephen Sannachi, Lakshmanan Quiaoit, Karina Fatima, Kashuf DiCenzo, Daniel Osapoetra, Laurentius O. Saifuddin, Murtuza Trudeau, Maureen Gandhi, Sonal Eisen, Andrea Wright, Frances Look-Hong, Nicole Sadeghi-Naini, Ali Tran, William T. Curpen, Belinda Czarnota, Gregory J. Oncotarget Research Paper Background: To investigate quantitative ultrasound (QUS) based higher-order texture derivatives in predicting the response to neoadjuvant chemotherapy (NAC) in patients with locally advanced breast cancer (LABC). Materials and Methods: 100 Patients with LABC were scanned before starting NAC. Five QUS parametric image-types were generated from radio-frequency data over the tumor volume. From each QUS parametric-image, 4 grey level co-occurrence matrix-based texture images were derived (20 QUS-Tex(1)), which were further processed to create texture derivatives (80 QUS-Tex(1)-Tex(2)). Patients were classified into responders and non-responders based on clinical/pathological responses to treatment. Three machine learning algorithms based on linear discriminant (FLD), k-nearest-neighbors (KNN), and support vector machine (SVM) were used for developing radiomic models of response prediction. Results: A KNN-model provided the best results with sensitivity, specificity, accuracy, and area under curve (AUC) of 87%, 81%, 82%, and 0.86, respectively. The most helpful features in separating the two response groups were QUS-Tex(1)-Tex(2) features. The 5-year recurrence-free survival (RFS) calculated for KNN predicted responders and non-responders using QUS-Tex(1)-Tex(2) model were comparable to RFS for the actual response groups. Conclusions: We report the first study demonstrating QUS texture-derivative methods in predicting NAC responses in LABC, which leads to better results compared to using texture features alone. Impact Journals LLC 2020-10-20 /pmc/articles/PMC7584238/ /pubmed/33144919 http://dx.doi.org/10.18632/oncotarget.27742 Text en Copyright: © 2020 Dasgupta et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Dasgupta, Archya Brade, Stephen Sannachi, Lakshmanan Quiaoit, Karina Fatima, Kashuf DiCenzo, Daniel Osapoetra, Laurentius O. Saifuddin, Murtuza Trudeau, Maureen Gandhi, Sonal Eisen, Andrea Wright, Frances Look-Hong, Nicole Sadeghi-Naini, Ali Tran, William T. Curpen, Belinda Czarnota, Gregory J. Quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer |
title | Quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer |
title_full | Quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer |
title_fullStr | Quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer |
title_full_unstemmed | Quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer |
title_short | Quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer |
title_sort | quantitative ultrasound radiomics using texture derivatives in prediction of treatment response to neo-adjuvant chemotherapy for locally advanced breast cancer |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7584238/ https://www.ncbi.nlm.nih.gov/pubmed/33144919 http://dx.doi.org/10.18632/oncotarget.27742 |
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