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Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2

The coronavirus 2019 (COVID-19) respiratory disease is caused by the novel coronavirus SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), which uses the enzyme ACE2 to enter human cells. This disease is characterized by important damage at a multi-organ level, partially due to the abundan...

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Autor principal: Estrada, Ernesto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: AIP Publishing LLC 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7585451/
https://www.ncbi.nlm.nih.gov/pubmed/32872802
http://dx.doi.org/10.1063/5.0015626
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author Estrada, Ernesto
author_facet Estrada, Ernesto
author_sort Estrada, Ernesto
collection PubMed
description The coronavirus 2019 (COVID-19) respiratory disease is caused by the novel coronavirus SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), which uses the enzyme ACE2 to enter human cells. This disease is characterized by important damage at a multi-organ level, partially due to the abundant expression of ACE2 in practically all human tissues. However, not every organ in which ACE2 is abundant is affected by SARS-CoV-2, which suggests the existence of other multi-organ routes for transmitting the perturbations produced by the virus. We consider here diffusive processes through the protein–protein interaction (PPI) network of proteins targeted by SARS-CoV-2 as an alternative route. We found a subdiffusive regime that allows the propagation of virus perturbations through the PPI network at a significant rate. By following the main subdiffusive routes across the PPI network, we identify proteins mainly expressed in the heart, cerebral cortex, thymus, testis, lymph node, kidney, among others of the organs reported to be affected by COVID-19.
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spelling pubmed-75854512020-10-26 Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2 Estrada, Ernesto Chaos Fast Track The coronavirus 2019 (COVID-19) respiratory disease is caused by the novel coronavirus SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), which uses the enzyme ACE2 to enter human cells. This disease is characterized by important damage at a multi-organ level, partially due to the abundant expression of ACE2 in practically all human tissues. However, not every organ in which ACE2 is abundant is affected by SARS-CoV-2, which suggests the existence of other multi-organ routes for transmitting the perturbations produced by the virus. We consider here diffusive processes through the protein–protein interaction (PPI) network of proteins targeted by SARS-CoV-2 as an alternative route. We found a subdiffusive regime that allows the propagation of virus perturbations through the PPI network at a significant rate. By following the main subdiffusive routes across the PPI network, we identify proteins mainly expressed in the heart, cerebral cortex, thymus, testis, lymph node, kidney, among others of the organs reported to be affected by COVID-19. AIP Publishing LLC 2020-08 2020-08-11 /pmc/articles/PMC7585451/ /pubmed/32872802 http://dx.doi.org/10.1063/5.0015626 Text en © 2020 Author(s) Published under license by AIP Publishing. 1054-1500/2020/30(8)/081104/13/$30.00 All article content, except where otherwise noted, is licensed under a Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Fast Track
Estrada, Ernesto
Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2
title Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2
title_full Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2
title_fullStr Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2
title_full_unstemmed Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2
title_short Fractional diffusion on the human proteome as an alternative to the multi-organ damage of SARS-CoV-2
title_sort fractional diffusion on the human proteome as an alternative to the multi-organ damage of sars-cov-2
topic Fast Track
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7585451/
https://www.ncbi.nlm.nih.gov/pubmed/32872802
http://dx.doi.org/10.1063/5.0015626
work_keys_str_mv AT estradaernesto fractionaldiffusiononthehumanproteomeasanalternativetothemultiorgandamageofsarscov2