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Emergence of Avian coronavirus genotype GI-11 in Colombia
Avian coronavirus (AvCoV/IBV) is a virus with high morbidity, which can cause respiratory, digestive, renal, and reproductive diseases in chickens. Molecular detection and sequencing are the main tool for identification and classification of AvCoV. Thirty-six samples were collected in three broiler...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7586380/ https://www.ncbi.nlm.nih.gov/pubmed/33104974 http://dx.doi.org/10.1007/s42770-020-00394-y |
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author | Santana-Clavijo, Nelson F. Brandão, Paulo E. |
author_facet | Santana-Clavijo, Nelson F. Brandão, Paulo E. |
author_sort | Santana-Clavijo, Nelson F. |
collection | PubMed |
description | Avian coronavirus (AvCoV/IBV) is a virus with high morbidity, which can cause respiratory, digestive, renal, and reproductive diseases in chickens. Molecular detection and sequencing are the main tool for identification and classification of AvCoV. Thirty-six samples were collected in three broiler farms from different regions in Colombia, due to mortality increase; ten samples were positive using RT-qPCR targeted to the 5′ UTR of AvCoV, and one sample was positive and had its partial S gene sequenced. Phylogenetic analysis revealed that this strain belongs to the GI-11 lineage, similar to the Brazilian cluster. Several lineages have already been described in Colombia but, to the best of our knowledge, this is the first time that GI-11 has been detected in this country, which suggests that this subtype may be more widespread in South America than previously thought. |
format | Online Article Text |
id | pubmed-7586380 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-75863802020-10-26 Emergence of Avian coronavirus genotype GI-11 in Colombia Santana-Clavijo, Nelson F. Brandão, Paulo E. Braz J Microbiol Veterinary Microbiology - Short Communication Avian coronavirus (AvCoV/IBV) is a virus with high morbidity, which can cause respiratory, digestive, renal, and reproductive diseases in chickens. Molecular detection and sequencing are the main tool for identification and classification of AvCoV. Thirty-six samples were collected in three broiler farms from different regions in Colombia, due to mortality increase; ten samples were positive using RT-qPCR targeted to the 5′ UTR of AvCoV, and one sample was positive and had its partial S gene sequenced. Phylogenetic analysis revealed that this strain belongs to the GI-11 lineage, similar to the Brazilian cluster. Several lineages have already been described in Colombia but, to the best of our knowledge, this is the first time that GI-11 has been detected in this country, which suggests that this subtype may be more widespread in South America than previously thought. Springer International Publishing 2020-10-26 /pmc/articles/PMC7586380/ /pubmed/33104974 http://dx.doi.org/10.1007/s42770-020-00394-y Text en © Sociedade Brasileira de Microbiologia 2020 |
spellingShingle | Veterinary Microbiology - Short Communication Santana-Clavijo, Nelson F. Brandão, Paulo E. Emergence of Avian coronavirus genotype GI-11 in Colombia |
title | Emergence of Avian coronavirus genotype GI-11 in Colombia |
title_full | Emergence of Avian coronavirus genotype GI-11 in Colombia |
title_fullStr | Emergence of Avian coronavirus genotype GI-11 in Colombia |
title_full_unstemmed | Emergence of Avian coronavirus genotype GI-11 in Colombia |
title_short | Emergence of Avian coronavirus genotype GI-11 in Colombia |
title_sort | emergence of avian coronavirus genotype gi-11 in colombia |
topic | Veterinary Microbiology - Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7586380/ https://www.ncbi.nlm.nih.gov/pubmed/33104974 http://dx.doi.org/10.1007/s42770-020-00394-y |
work_keys_str_mv | AT santanaclavijonelsonf emergenceofaviancoronavirusgenotypegi11incolombia AT brandaopauloe emergenceofaviancoronavirusgenotypegi11incolombia |