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Pseudo-Improper-Dihedral Model for Intrinsically Disordered Proteins

[Image: see text] We present a new coarse-grained C(α)-based protein model with a nonradial multibody pseudo-improper-dihedral potential that is transferable, time-independent, and suitable for molecular dynamics. It captures the nature of backbone and side-chain interactions between amino acid resi...

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Detalles Bibliográficos
Autores principales: Mioduszewski, Łukasz, Różycki, Bartosz, Cieplak, Marek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2020
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588027/
https://www.ncbi.nlm.nih.gov/pubmed/32436706
http://dx.doi.org/10.1021/acs.jctc.0c00338
Descripción
Sumario:[Image: see text] We present a new coarse-grained C(α)-based protein model with a nonradial multibody pseudo-improper-dihedral potential that is transferable, time-independent, and suitable for molecular dynamics. It captures the nature of backbone and side-chain interactions between amino acid residues by adapting a simple improper dihedral term for a one-bead-per-residue model. It is parameterized for intrinsically disordered proteins and applicable to simulations of such proteins and their assemblies on millisecond time scales.