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Pseudo-Improper-Dihedral Model for Intrinsically Disordered Proteins
[Image: see text] We present a new coarse-grained C(α)-based protein model with a nonradial multibody pseudo-improper-dihedral potential that is transferable, time-independent, and suitable for molecular dynamics. It captures the nature of backbone and side-chain interactions between amino acid resi...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588027/ https://www.ncbi.nlm.nih.gov/pubmed/32436706 http://dx.doi.org/10.1021/acs.jctc.0c00338 |
Sumario: | [Image: see text] We present a new coarse-grained C(α)-based protein model with a nonradial multibody pseudo-improper-dihedral potential that is transferable, time-independent, and suitable for molecular dynamics. It captures the nature of backbone and side-chain interactions between amino acid residues by adapting a simple improper dihedral term for a one-bead-per-residue model. It is parameterized for intrinsically disordered proteins and applicable to simulations of such proteins and their assemblies on millisecond time scales. |
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