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Role of Microsolvation and Quantum Effects in the Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution
[Image: see text] Hydrogen abstraction from ethanol by atomic hydrogen in aqueous solution is studied using two theoretical approaches: the multipath variational transition state theory (MP-VTST) and a path-integral formalism in combination with free-energy perturbation and umbrella sampling (PI-FEP...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2020
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588029/ https://www.ncbi.nlm.nih.gov/pubmed/31904954 http://dx.doi.org/10.1021/acs.jctc.9b00774 |
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author | Kannath, Suraj Adamczyk, Paweł Ferro-Costas, David Fernández-Ramos, Antonio Major, Dan Thomas Dybala-Defratyka, Agnieszka |
author_facet | Kannath, Suraj Adamczyk, Paweł Ferro-Costas, David Fernández-Ramos, Antonio Major, Dan Thomas Dybala-Defratyka, Agnieszka |
author_sort | Kannath, Suraj |
collection | PubMed |
description | [Image: see text] Hydrogen abstraction from ethanol by atomic hydrogen in aqueous solution is studied using two theoretical approaches: the multipath variational transition state theory (MP-VTST) and a path-integral formalism in combination with free-energy perturbation and umbrella sampling (PI-FEP/UM). The performance of the models is compared to experimental values of H kinetic isotope effects (KIE). Solvation models used in this study ranged from purely implicit, via mixed–microsolvation treated quantum mechanically via the density functional theory (DFT) to fully explicit representation of the solvent, which was incorporated using a combined quantum mechanical-molecular mechanical (QM/MM) potential. The effects of the transition state conformation and the position of microsolvating water molecules interacting with the solute on the KIE are discussed. The KIEs are in good agreement with experiment when MP-VTST is used together with a model that includes microsolvation of the polar part of ethanol by five or six water molecules, emphasizing the importance of explicit solvation in KIE calculations. Both, MP-VTST and PI-FEP/UM enable detailed characterization of nuclear quantum effects accompanying the hydrogen atom transfer reaction in aqueous solution. |
format | Online Article Text |
id | pubmed-7588029 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-75880292020-10-27 Role of Microsolvation and Quantum Effects in the Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution Kannath, Suraj Adamczyk, Paweł Ferro-Costas, David Fernández-Ramos, Antonio Major, Dan Thomas Dybala-Defratyka, Agnieszka J Chem Theory Comput [Image: see text] Hydrogen abstraction from ethanol by atomic hydrogen in aqueous solution is studied using two theoretical approaches: the multipath variational transition state theory (MP-VTST) and a path-integral formalism in combination with free-energy perturbation and umbrella sampling (PI-FEP/UM). The performance of the models is compared to experimental values of H kinetic isotope effects (KIE). Solvation models used in this study ranged from purely implicit, via mixed–microsolvation treated quantum mechanically via the density functional theory (DFT) to fully explicit representation of the solvent, which was incorporated using a combined quantum mechanical-molecular mechanical (QM/MM) potential. The effects of the transition state conformation and the position of microsolvating water molecules interacting with the solute on the KIE are discussed. The KIEs are in good agreement with experiment when MP-VTST is used together with a model that includes microsolvation of the polar part of ethanol by five or six water molecules, emphasizing the importance of explicit solvation in KIE calculations. Both, MP-VTST and PI-FEP/UM enable detailed characterization of nuclear quantum effects accompanying the hydrogen atom transfer reaction in aqueous solution. American Chemical Society 2020-01-06 2020-02-11 /pmc/articles/PMC7588029/ /pubmed/31904954 http://dx.doi.org/10.1021/acs.jctc.9b00774 Text en This is an open access article published under a Creative Commons Attribution (CC-BY) License (http://pubs.acs.org/page/policy/authorchoice_ccby_termsofuse.html) , which permits unrestricted use, distribution and reproduction in any medium, provided the author and source are cited. |
spellingShingle | Kannath, Suraj Adamczyk, Paweł Ferro-Costas, David Fernández-Ramos, Antonio Major, Dan Thomas Dybala-Defratyka, Agnieszka Role of Microsolvation and Quantum Effects in the Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution |
title | Role of Microsolvation and Quantum Effects in the
Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen
Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution |
title_full | Role of Microsolvation and Quantum Effects in the
Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen
Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution |
title_fullStr | Role of Microsolvation and Quantum Effects in the
Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen
Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution |
title_full_unstemmed | Role of Microsolvation and Quantum Effects in the
Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen
Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution |
title_short | Role of Microsolvation and Quantum Effects in the
Accurate Prediction of Kinetic Isotope Effects: The Case of Hydrogen
Atom Abstraction in Ethanol by Atomic Hydrogen in Aqueous Solution |
title_sort | role of microsolvation and quantum effects in the
accurate prediction of kinetic isotope effects: the case of hydrogen
atom abstraction in ethanol by atomic hydrogen in aqueous solution |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588029/ https://www.ncbi.nlm.nih.gov/pubmed/31904954 http://dx.doi.org/10.1021/acs.jctc.9b00774 |
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