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Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration

This paper presents a Bayesian analysis of linear mixed models for quantile regression based on a Cholesky decomposition for the covariance matrix of random effects. We develop a Bayesian shrinkage approach to quantile mixed regression models using a Bayesian adaptive lasso and an extended Bayesian...

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Detalles Bibliográficos
Autores principales: Ji, Yonggang, Shi, Haifang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588124/
https://www.ncbi.nlm.nih.gov/pubmed/33104698
http://dx.doi.org/10.1371/journal.pone.0241197
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author Ji, Yonggang
Shi, Haifang
author_facet Ji, Yonggang
Shi, Haifang
author_sort Ji, Yonggang
collection PubMed
description This paper presents a Bayesian analysis of linear mixed models for quantile regression based on a Cholesky decomposition for the covariance matrix of random effects. We develop a Bayesian shrinkage approach to quantile mixed regression models using a Bayesian adaptive lasso and an extended Bayesian adaptive group lasso. We also consider variable selection procedures for both fixed and random effects in a linear quantile mixed model via the Bayesian adaptive lasso and extended Bayesian adaptive group lasso with spike and slab priors. To improve mixing of the Markov chains, a simple and efficient partially collapsed Gibbs sampling algorithm is developed for posterior inference. Simulation experiments and an application to the Age-Related Macular Degeneration Trial data to demonstrate the proposed methods.
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spelling pubmed-75881242020-10-30 Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration Ji, Yonggang Shi, Haifang PLoS One Research Article This paper presents a Bayesian analysis of linear mixed models for quantile regression based on a Cholesky decomposition for the covariance matrix of random effects. We develop a Bayesian shrinkage approach to quantile mixed regression models using a Bayesian adaptive lasso and an extended Bayesian adaptive group lasso. We also consider variable selection procedures for both fixed and random effects in a linear quantile mixed model via the Bayesian adaptive lasso and extended Bayesian adaptive group lasso with spike and slab priors. To improve mixing of the Markov chains, a simple and efficient partially collapsed Gibbs sampling algorithm is developed for posterior inference. Simulation experiments and an application to the Age-Related Macular Degeneration Trial data to demonstrate the proposed methods. Public Library of Science 2020-10-26 /pmc/articles/PMC7588124/ /pubmed/33104698 http://dx.doi.org/10.1371/journal.pone.0241197 Text en © 2020 Ji, Shi http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ji, Yonggang
Shi, Haifang
Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration
title Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration
title_full Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration
title_fullStr Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration
title_full_unstemmed Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration
title_short Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration
title_sort bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588124/
https://www.ncbi.nlm.nih.gov/pubmed/33104698
http://dx.doi.org/10.1371/journal.pone.0241197
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