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Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration
This paper presents a Bayesian analysis of linear mixed models for quantile regression based on a Cholesky decomposition for the covariance matrix of random effects. We develop a Bayesian shrinkage approach to quantile mixed regression models using a Bayesian adaptive lasso and an extended Bayesian...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588124/ https://www.ncbi.nlm.nih.gov/pubmed/33104698 http://dx.doi.org/10.1371/journal.pone.0241197 |
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author | Ji, Yonggang Shi, Haifang |
author_facet | Ji, Yonggang Shi, Haifang |
author_sort | Ji, Yonggang |
collection | PubMed |
description | This paper presents a Bayesian analysis of linear mixed models for quantile regression based on a Cholesky decomposition for the covariance matrix of random effects. We develop a Bayesian shrinkage approach to quantile mixed regression models using a Bayesian adaptive lasso and an extended Bayesian adaptive group lasso. We also consider variable selection procedures for both fixed and random effects in a linear quantile mixed model via the Bayesian adaptive lasso and extended Bayesian adaptive group lasso with spike and slab priors. To improve mixing of the Markov chains, a simple and efficient partially collapsed Gibbs sampling algorithm is developed for posterior inference. Simulation experiments and an application to the Age-Related Macular Degeneration Trial data to demonstrate the proposed methods. |
format | Online Article Text |
id | pubmed-7588124 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-75881242020-10-30 Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration Ji, Yonggang Shi, Haifang PLoS One Research Article This paper presents a Bayesian analysis of linear mixed models for quantile regression based on a Cholesky decomposition for the covariance matrix of random effects. We develop a Bayesian shrinkage approach to quantile mixed regression models using a Bayesian adaptive lasso and an extended Bayesian adaptive group lasso. We also consider variable selection procedures for both fixed and random effects in a linear quantile mixed model via the Bayesian adaptive lasso and extended Bayesian adaptive group lasso with spike and slab priors. To improve mixing of the Markov chains, a simple and efficient partially collapsed Gibbs sampling algorithm is developed for posterior inference. Simulation experiments and an application to the Age-Related Macular Degeneration Trial data to demonstrate the proposed methods. Public Library of Science 2020-10-26 /pmc/articles/PMC7588124/ /pubmed/33104698 http://dx.doi.org/10.1371/journal.pone.0241197 Text en © 2020 Ji, Shi http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Ji, Yonggang Shi, Haifang Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration |
title | Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration |
title_full | Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration |
title_fullStr | Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration |
title_full_unstemmed | Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration |
title_short | Bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration |
title_sort | bayesian variable selection in linear quantile mixed models for longitudinal data with application to macular degeneration |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588124/ https://www.ncbi.nlm.nih.gov/pubmed/33104698 http://dx.doi.org/10.1371/journal.pone.0241197 |
work_keys_str_mv | AT jiyonggang bayesianvariableselectioninlinearquantilemixedmodelsforlongitudinaldatawithapplicationtomaculardegeneration AT shihaifang bayesianvariableselectioninlinearquantilemixedmodelsforlongitudinaldatawithapplicationtomaculardegeneration |