Cargando…
Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis
Molecular genetic methods are increasingly used to supplement or substitute classical morphology-based species identification. Here, we employ a COI mini-barcode coupled high-resolution melting analysis to quickly, cost-efficiently and reliably determine larvae of two closely related Cychramus (Cole...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588358/ https://www.ncbi.nlm.nih.gov/pubmed/32901359 http://dx.doi.org/10.1007/s11033-020-05786-9 |
_version_ | 1783600354273787904 |
---|---|
author | Zangl, Lukas Oberreiter, Hannes Huss, Herbert Stabentheiner, Edith Sturmbauer, Christian Koblmüller, Stephan |
author_facet | Zangl, Lukas Oberreiter, Hannes Huss, Herbert Stabentheiner, Edith Sturmbauer, Christian Koblmüller, Stephan |
author_sort | Zangl, Lukas |
collection | PubMed |
description | Molecular genetic methods are increasingly used to supplement or substitute classical morphology-based species identification. Here, we employ a COI mini-barcode coupled high-resolution melting analysis to quickly, cost-efficiently and reliably determine larvae of two closely related Cychramus (Coleoptera, Nitidulidae) species. Euclidean distance comparison (p < 0.01) and a Welch t-test of the melting point temperatures (p < 0.01) provide highly significant statistical evidence for species specific differences in melting and fluorescence curves, thus allowing the assignment of larvae to either of the two species. This protocol serves as a fast, low-cost and low-tech method to discriminate between pairs or groups of closely related species and can be adapted and applied to various ecological research questions. |
format | Online Article Text |
id | pubmed-7588358 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-75883582020-10-29 Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis Zangl, Lukas Oberreiter, Hannes Huss, Herbert Stabentheiner, Edith Sturmbauer, Christian Koblmüller, Stephan Mol Biol Rep Short Communication Molecular genetic methods are increasingly used to supplement or substitute classical morphology-based species identification. Here, we employ a COI mini-barcode coupled high-resolution melting analysis to quickly, cost-efficiently and reliably determine larvae of two closely related Cychramus (Coleoptera, Nitidulidae) species. Euclidean distance comparison (p < 0.01) and a Welch t-test of the melting point temperatures (p < 0.01) provide highly significant statistical evidence for species specific differences in melting and fluorescence curves, thus allowing the assignment of larvae to either of the two species. This protocol serves as a fast, low-cost and low-tech method to discriminate between pairs or groups of closely related species and can be adapted and applied to various ecological research questions. Springer Netherlands 2020-09-08 2020 /pmc/articles/PMC7588358/ /pubmed/32901359 http://dx.doi.org/10.1007/s11033-020-05786-9 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Short Communication Zangl, Lukas Oberreiter, Hannes Huss, Herbert Stabentheiner, Edith Sturmbauer, Christian Koblmüller, Stephan Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis |
title | Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis |
title_full | Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis |
title_fullStr | Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis |
title_full_unstemmed | Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis |
title_short | Discriminating larvae of two syntopic Cychramus species (Coleoptera, Nitidulidae) by means of bar-HRM analysis |
title_sort | discriminating larvae of two syntopic cychramus species (coleoptera, nitidulidae) by means of bar-hrm analysis |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7588358/ https://www.ncbi.nlm.nih.gov/pubmed/32901359 http://dx.doi.org/10.1007/s11033-020-05786-9 |
work_keys_str_mv | AT zangllukas discriminatinglarvaeoftwosyntopiccychramusspeciescoleopteranitidulidaebymeansofbarhrmanalysis AT oberreiterhannes discriminatinglarvaeoftwosyntopiccychramusspeciescoleopteranitidulidaebymeansofbarhrmanalysis AT hussherbert discriminatinglarvaeoftwosyntopiccychramusspeciescoleopteranitidulidaebymeansofbarhrmanalysis AT stabentheineredith discriminatinglarvaeoftwosyntopiccychramusspeciescoleopteranitidulidaebymeansofbarhrmanalysis AT sturmbauerchristian discriminatinglarvaeoftwosyntopiccychramusspeciescoleopteranitidulidaebymeansofbarhrmanalysis AT koblmullerstephan discriminatinglarvaeoftwosyntopiccychramusspeciescoleopteranitidulidaebymeansofbarhrmanalysis |