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Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development
The COVID‐19 pandemic has led to an urgent need for engaging computational alternatives to traditional laboratory exercises. Here we introduce a customizable and flexible workflow, designed with the SARS CoV‐2 virus that causes COVID‐19 in mind, as a means of reinforcing fundamental biology concepts...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Inc.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590178/ https://www.ncbi.nlm.nih.gov/pubmed/33463080 http://dx.doi.org/10.1002/bmb.21413 |
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author | Bryce, Samantha Heath, Kevin N. Issi, Luca Ryder, Elizabeth F. P. Rao, Reeta |
author_facet | Bryce, Samantha Heath, Kevin N. Issi, Luca Ryder, Elizabeth F. P. Rao, Reeta |
author_sort | Bryce, Samantha |
collection | PubMed |
description | The COVID‐19 pandemic has led to an urgent need for engaging computational alternatives to traditional laboratory exercises. Here we introduce a customizable and flexible workflow, designed with the SARS CoV‐2 virus that causes COVID‐19 in mind, as a means of reinforcing fundamental biology concepts using bioinformatics approaches. This workflow is accessible to a wide range of students in life science majors regardless of their prior bioinformatics knowledge, and all software is freely available, thus eliminating potential cost barriers. Using the workflow can thus provide a diverse group of students the opportunity to conduct inquiry‐driven research. Here we demonstrate the utility of this workflow and outline the logical steps involved in the identification of therapeutic or vaccine targets against SARS CoV‐2. We also provide an example of how the workflow may be adapted to other infectious microbes. Overall, our workflow anchors student understanding of viral biology and genomics and allows students to develop valuable bioinformatics expertise as well as to hone critical thinking and problem‐solving skills, while also creating an opportunity to better understand emerging information surrounding the COVID‐19 pandemic. |
format | Online Article Text |
id | pubmed-7590178 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | John Wiley & Sons, Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75901782020-10-30 Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development Bryce, Samantha Heath, Kevin N. Issi, Luca Ryder, Elizabeth F. P. Rao, Reeta Biochem Mol Biol Educ Covid‐19 The COVID‐19 pandemic has led to an urgent need for engaging computational alternatives to traditional laboratory exercises. Here we introduce a customizable and flexible workflow, designed with the SARS CoV‐2 virus that causes COVID‐19 in mind, as a means of reinforcing fundamental biology concepts using bioinformatics approaches. This workflow is accessible to a wide range of students in life science majors regardless of their prior bioinformatics knowledge, and all software is freely available, thus eliminating potential cost barriers. Using the workflow can thus provide a diverse group of students the opportunity to conduct inquiry‐driven research. Here we demonstrate the utility of this workflow and outline the logical steps involved in the identification of therapeutic or vaccine targets against SARS CoV‐2. We also provide an example of how the workflow may be adapted to other infectious microbes. Overall, our workflow anchors student understanding of viral biology and genomics and allows students to develop valuable bioinformatics expertise as well as to hone critical thinking and problem‐solving skills, while also creating an opportunity to better understand emerging information surrounding the COVID‐19 pandemic. John Wiley & Sons, Inc. 2020-07-29 2020 /pmc/articles/PMC7590178/ /pubmed/33463080 http://dx.doi.org/10.1002/bmb.21413 Text en © 2020 The Authors. Biochemistry and Molecular Biology Education published by Wiley Periodicals LLC on behalf of International Union of Biochemistry and Molecular Biology This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Covid‐19 Bryce, Samantha Heath, Kevin N. Issi, Luca Ryder, Elizabeth F. P. Rao, Reeta Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development |
title | Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development |
title_full | Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development |
title_fullStr | Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development |
title_full_unstemmed | Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development |
title_short | Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development |
title_sort | using covid‐19 as a teaching tool in a time of remote learning: a workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development |
topic | Covid‐19 |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590178/ https://www.ncbi.nlm.nih.gov/pubmed/33463080 http://dx.doi.org/10.1002/bmb.21413 |
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