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Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development

The COVID‐19 pandemic has led to an urgent need for engaging computational alternatives to traditional laboratory exercises. Here we introduce a customizable and flexible workflow, designed with the SARS CoV‐2 virus that causes COVID‐19 in mind, as a means of reinforcing fundamental biology concepts...

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Autores principales: Bryce, Samantha, Heath, Kevin N., Issi, Luca, Ryder, Elizabeth F., P. Rao, Reeta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590178/
https://www.ncbi.nlm.nih.gov/pubmed/33463080
http://dx.doi.org/10.1002/bmb.21413
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author Bryce, Samantha
Heath, Kevin N.
Issi, Luca
Ryder, Elizabeth F.
P. Rao, Reeta
author_facet Bryce, Samantha
Heath, Kevin N.
Issi, Luca
Ryder, Elizabeth F.
P. Rao, Reeta
author_sort Bryce, Samantha
collection PubMed
description The COVID‐19 pandemic has led to an urgent need for engaging computational alternatives to traditional laboratory exercises. Here we introduce a customizable and flexible workflow, designed with the SARS CoV‐2 virus that causes COVID‐19 in mind, as a means of reinforcing fundamental biology concepts using bioinformatics approaches. This workflow is accessible to a wide range of students in life science majors regardless of their prior bioinformatics knowledge, and all software is freely available, thus eliminating potential cost barriers. Using the workflow can thus provide a diverse group of students the opportunity to conduct inquiry‐driven research. Here we demonstrate the utility of this workflow and outline the logical steps involved in the identification of therapeutic or vaccine targets against SARS CoV‐2. We also provide an example of how the workflow may be adapted to other infectious microbes. Overall, our workflow anchors student understanding of viral biology and genomics and allows students to develop valuable bioinformatics expertise as well as to hone critical thinking and problem‐solving skills, while also creating an opportunity to better understand emerging information surrounding the COVID‐19 pandemic.
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spelling pubmed-75901782020-10-30 Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development Bryce, Samantha Heath, Kevin N. Issi, Luca Ryder, Elizabeth F. P. Rao, Reeta Biochem Mol Biol Educ Covid‐19 The COVID‐19 pandemic has led to an urgent need for engaging computational alternatives to traditional laboratory exercises. Here we introduce a customizable and flexible workflow, designed with the SARS CoV‐2 virus that causes COVID‐19 in mind, as a means of reinforcing fundamental biology concepts using bioinformatics approaches. This workflow is accessible to a wide range of students in life science majors regardless of their prior bioinformatics knowledge, and all software is freely available, thus eliminating potential cost barriers. Using the workflow can thus provide a diverse group of students the opportunity to conduct inquiry‐driven research. Here we demonstrate the utility of this workflow and outline the logical steps involved in the identification of therapeutic or vaccine targets against SARS CoV‐2. We also provide an example of how the workflow may be adapted to other infectious microbes. Overall, our workflow anchors student understanding of viral biology and genomics and allows students to develop valuable bioinformatics expertise as well as to hone critical thinking and problem‐solving skills, while also creating an opportunity to better understand emerging information surrounding the COVID‐19 pandemic. John Wiley & Sons, Inc. 2020-07-29 2020 /pmc/articles/PMC7590178/ /pubmed/33463080 http://dx.doi.org/10.1002/bmb.21413 Text en © 2020 The Authors. Biochemistry and Molecular Biology Education published by Wiley Periodicals LLC on behalf of International Union of Biochemistry and Molecular Biology This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Covid‐19
Bryce, Samantha
Heath, Kevin N.
Issi, Luca
Ryder, Elizabeth F.
P. Rao, Reeta
Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development
title Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development
title_full Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development
title_fullStr Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development
title_full_unstemmed Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development
title_short Using COVID‐19 as a teaching tool in a time of remote learning: A workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development
title_sort using covid‐19 as a teaching tool in a time of remote learning: a workflow for bioinformatic approaches to identifying candidates for therapeutic and vaccine development
topic Covid‐19
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590178/
https://www.ncbi.nlm.nih.gov/pubmed/33463080
http://dx.doi.org/10.1002/bmb.21413
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