Cargando…
Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization
Identifying the atomic structure of organic–inorganic interfaces is challenging with current research tools. Interpreting the structure of complex molecular adsorbates from microscopy images can be difficult, and using atomistic simulations to find the most stable structures is limited to partial ex...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Beilstein-Institut
2020
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590619/ https://www.ncbi.nlm.nih.gov/pubmed/33134002 http://dx.doi.org/10.3762/bjnano.11.140 |
_version_ | 1783600838855360512 |
---|---|
author | Järvi, Jari Rinke, Patrick Todorović, Milica |
author_facet | Järvi, Jari Rinke, Patrick Todorović, Milica |
author_sort | Järvi, Jari |
collection | PubMed |
description | Identifying the atomic structure of organic–inorganic interfaces is challenging with current research tools. Interpreting the structure of complex molecular adsorbates from microscopy images can be difficult, and using atomistic simulations to find the most stable structures is limited to partial exploration of the potential energy surface due to the high-dimensional phase space. In this study, we present the recently developed Bayesian Optimization Structure Search (BOSS) method as an efficient solution for identifying the structure of non-planar adsorbates. We apply BOSS with density-functional theory simulations to detect the stable adsorbate structures of (1S)-camphor on the Cu(111) surface. We identify the optimal structure among eight unique types of stable adsorbates, in which camphor chemisorbs via oxygen (global minimum) or physisorbs via hydrocarbons to the Cu(111) surface. This study demonstrates that new cross-disciplinary tools, such as BOSS, facilitate the description of complex surface structures and their properties, and ultimately allow us to tune the functionality of advanced materials. |
format | Online Article Text |
id | pubmed-7590619 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Beilstein-Institut |
record_format | MEDLINE/PubMed |
spelling | pubmed-75906192020-10-30 Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization Järvi, Jari Rinke, Patrick Todorović, Milica Beilstein J Nanotechnol Full Research Paper Identifying the atomic structure of organic–inorganic interfaces is challenging with current research tools. Interpreting the structure of complex molecular adsorbates from microscopy images can be difficult, and using atomistic simulations to find the most stable structures is limited to partial exploration of the potential energy surface due to the high-dimensional phase space. In this study, we present the recently developed Bayesian Optimization Structure Search (BOSS) method as an efficient solution for identifying the structure of non-planar adsorbates. We apply BOSS with density-functional theory simulations to detect the stable adsorbate structures of (1S)-camphor on the Cu(111) surface. We identify the optimal structure among eight unique types of stable adsorbates, in which camphor chemisorbs via oxygen (global minimum) or physisorbs via hydrocarbons to the Cu(111) surface. This study demonstrates that new cross-disciplinary tools, such as BOSS, facilitate the description of complex surface structures and their properties, and ultimately allow us to tune the functionality of advanced materials. Beilstein-Institut 2020-10-19 /pmc/articles/PMC7590619/ /pubmed/33134002 http://dx.doi.org/10.3762/bjnano.11.140 Text en Copyright © 2020, Järvi et al. https://creativecommons.org/licenses/by/4.0https://www.beilstein-journals.org/bjnano/termsThis is an Open Access article under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0). Please note that the reuse, redistribution and reproduction in particular requires that the authors and source are credited. The license is subject to the Beilstein Journal of Nanotechnology terms and conditions: (https://www.beilstein-journals.org/bjnano/terms) |
spellingShingle | Full Research Paper Järvi, Jari Rinke, Patrick Todorović, Milica Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization |
title | Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization |
title_full | Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization |
title_fullStr | Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization |
title_full_unstemmed | Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization |
title_short | Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization |
title_sort | detecting stable adsorbates of (1s)-camphor on cu(111) with bayesian optimization |
topic | Full Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590619/ https://www.ncbi.nlm.nih.gov/pubmed/33134002 http://dx.doi.org/10.3762/bjnano.11.140 |
work_keys_str_mv | AT jarvijari detectingstableadsorbatesof1scamphoroncu111withbayesianoptimization AT rinkepatrick detectingstableadsorbatesof1scamphoroncu111withbayesianoptimization AT todorovicmilica detectingstableadsorbatesof1scamphoroncu111withbayesianoptimization |