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Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization

Identifying the atomic structure of organic–inorganic interfaces is challenging with current research tools. Interpreting the structure of complex molecular adsorbates from microscopy images can be difficult, and using atomistic simulations to find the most stable structures is limited to partial ex...

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Detalles Bibliográficos
Autores principales: Järvi, Jari, Rinke, Patrick, Todorović, Milica
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Beilstein-Institut 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590619/
https://www.ncbi.nlm.nih.gov/pubmed/33134002
http://dx.doi.org/10.3762/bjnano.11.140
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author Järvi, Jari
Rinke, Patrick
Todorović, Milica
author_facet Järvi, Jari
Rinke, Patrick
Todorović, Milica
author_sort Järvi, Jari
collection PubMed
description Identifying the atomic structure of organic–inorganic interfaces is challenging with current research tools. Interpreting the structure of complex molecular adsorbates from microscopy images can be difficult, and using atomistic simulations to find the most stable structures is limited to partial exploration of the potential energy surface due to the high-dimensional phase space. In this study, we present the recently developed Bayesian Optimization Structure Search (BOSS) method as an efficient solution for identifying the structure of non-planar adsorbates. We apply BOSS with density-functional theory simulations to detect the stable adsorbate structures of (1S)-camphor on the Cu(111) surface. We identify the optimal structure among eight unique types of stable adsorbates, in which camphor chemisorbs via oxygen (global minimum) or physisorbs via hydrocarbons to the Cu(111) surface. This study demonstrates that new cross-disciplinary tools, such as BOSS, facilitate the description of complex surface structures and their properties, and ultimately allow us to tune the functionality of advanced materials.
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spelling pubmed-75906192020-10-30 Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization Järvi, Jari Rinke, Patrick Todorović, Milica Beilstein J Nanotechnol Full Research Paper Identifying the atomic structure of organic–inorganic interfaces is challenging with current research tools. Interpreting the structure of complex molecular adsorbates from microscopy images can be difficult, and using atomistic simulations to find the most stable structures is limited to partial exploration of the potential energy surface due to the high-dimensional phase space. In this study, we present the recently developed Bayesian Optimization Structure Search (BOSS) method as an efficient solution for identifying the structure of non-planar adsorbates. We apply BOSS with density-functional theory simulations to detect the stable adsorbate structures of (1S)-camphor on the Cu(111) surface. We identify the optimal structure among eight unique types of stable adsorbates, in which camphor chemisorbs via oxygen (global minimum) or physisorbs via hydrocarbons to the Cu(111) surface. This study demonstrates that new cross-disciplinary tools, such as BOSS, facilitate the description of complex surface structures and their properties, and ultimately allow us to tune the functionality of advanced materials. Beilstein-Institut 2020-10-19 /pmc/articles/PMC7590619/ /pubmed/33134002 http://dx.doi.org/10.3762/bjnano.11.140 Text en Copyright © 2020, Järvi et al. https://creativecommons.org/licenses/by/4.0https://www.beilstein-journals.org/bjnano/termsThis is an Open Access article under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0). Please note that the reuse, redistribution and reproduction in particular requires that the authors and source are credited. The license is subject to the Beilstein Journal of Nanotechnology terms and conditions: (https://www.beilstein-journals.org/bjnano/terms)
spellingShingle Full Research Paper
Järvi, Jari
Rinke, Patrick
Todorović, Milica
Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization
title Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization
title_full Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization
title_fullStr Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization
title_full_unstemmed Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization
title_short Detecting stable adsorbates of (1S)-camphor on Cu(111) with Bayesian optimization
title_sort detecting stable adsorbates of (1s)-camphor on cu(111) with bayesian optimization
topic Full Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590619/
https://www.ncbi.nlm.nih.gov/pubmed/33134002
http://dx.doi.org/10.3762/bjnano.11.140
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