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Biocuration - mapping resources and needs

Background: Biocuration involves a variety of teams and individuals across the globe. However, they may not self-identify as biocurators, as they may be unaware of biocuration as a career path or because biocuration is only part of their role. The lack of a clear, up-to-date profile of biocuration c...

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Autores principales: Holinski, Alexandra, Burke, Melissa L., Morgan, Sarah L., McQuilton, Peter, Palagi, Patricia M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590901/
https://www.ncbi.nlm.nih.gov/pubmed/33145007
http://dx.doi.org/10.12688/f1000research.25413.2
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author Holinski, Alexandra
Burke, Melissa L.
Morgan, Sarah L.
McQuilton, Peter
Palagi, Patricia M.
author_facet Holinski, Alexandra
Burke, Melissa L.
Morgan, Sarah L.
McQuilton, Peter
Palagi, Patricia M.
author_sort Holinski, Alexandra
collection PubMed
description Background: Biocuration involves a variety of teams and individuals across the globe. However, they may not self-identify as biocurators, as they may be unaware of biocuration as a career path or because biocuration is only part of their role. The lack of a clear, up-to-date profile of biocuration creates challenges for organisations like ELIXIR, the ISB and GOBLET to systematically support biocurators and for biocurators themselves to develop their own careers. Therefore, the ELIXIR Training Platform launched an Implementation Study in order to i) identify communities of biocurators, ii) map the type of curation work being done, iii) assess biocuration training, and iv) draw a picture of biocuration career development. Methods: To achieve the goals of the study, we carried out a global survey on the nature of biocuration work, the tools and resources that are used, training that has been received and additional training needs. To examine these topics in more detail we ran workshop-based discussions at ISB Biocuration Conference 2019 and the ELIXIR All Hands Meeting 2019. We also had guided conversations with selected people from the EMBL-European Bioinformatics Institute. Results: The study illustrates that biocurators have diverse job titles, are highly skilled, perform a variety of activities and use a wide range of tools and resources. The study emphasises the need for training in programming and coding skills, but also highlights the difficulties curators face in terms of career development and community building. Conclusion: Biocurators themselves, as well as organisations like ELIXIR, GOBLET and ISB must work together towards structural change to overcome these difficulties. In this article we discuss recommendations to ensure that biocuration as a role is visible and valued, thereby helping biocurators to proceed with their career.
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spelling pubmed-75909012020-11-02 Biocuration - mapping resources and needs Holinski, Alexandra Burke, Melissa L. Morgan, Sarah L. McQuilton, Peter Palagi, Patricia M. F1000Res Research Article Background: Biocuration involves a variety of teams and individuals across the globe. However, they may not self-identify as biocurators, as they may be unaware of biocuration as a career path or because biocuration is only part of their role. The lack of a clear, up-to-date profile of biocuration creates challenges for organisations like ELIXIR, the ISB and GOBLET to systematically support biocurators and for biocurators themselves to develop their own careers. Therefore, the ELIXIR Training Platform launched an Implementation Study in order to i) identify communities of biocurators, ii) map the type of curation work being done, iii) assess biocuration training, and iv) draw a picture of biocuration career development. Methods: To achieve the goals of the study, we carried out a global survey on the nature of biocuration work, the tools and resources that are used, training that has been received and additional training needs. To examine these topics in more detail we ran workshop-based discussions at ISB Biocuration Conference 2019 and the ELIXIR All Hands Meeting 2019. We also had guided conversations with selected people from the EMBL-European Bioinformatics Institute. Results: The study illustrates that biocurators have diverse job titles, are highly skilled, perform a variety of activities and use a wide range of tools and resources. The study emphasises the need for training in programming and coding skills, but also highlights the difficulties curators face in terms of career development and community building. Conclusion: Biocurators themselves, as well as organisations like ELIXIR, GOBLET and ISB must work together towards structural change to overcome these difficulties. In this article we discuss recommendations to ensure that biocuration as a role is visible and valued, thereby helping biocurators to proceed with their career. F1000 Research Limited 2020-12-02 /pmc/articles/PMC7590901/ /pubmed/33145007 http://dx.doi.org/10.12688/f1000research.25413.2 Text en Copyright: © 2020 Holinski A et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Holinski, Alexandra
Burke, Melissa L.
Morgan, Sarah L.
McQuilton, Peter
Palagi, Patricia M.
Biocuration - mapping resources and needs
title Biocuration - mapping resources and needs
title_full Biocuration - mapping resources and needs
title_fullStr Biocuration - mapping resources and needs
title_full_unstemmed Biocuration - mapping resources and needs
title_short Biocuration - mapping resources and needs
title_sort biocuration - mapping resources and needs
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7590901/
https://www.ncbi.nlm.nih.gov/pubmed/33145007
http://dx.doi.org/10.12688/f1000research.25413.2
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