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Discrimination of alcohol dependence based on the convolutional neural network
In this paper, a total of 20 sites of single nucleotide polymorphisms (SNPs) on the serotonin 3 receptor A gene (HTR3A) and B gene (HTR3B) are used for feature fusion with age, education and marital status information, and the grid search-support vector machine (GS-SVM), the convolutional neural net...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591038/ https://www.ncbi.nlm.nih.gov/pubmed/33108388 http://dx.doi.org/10.1371/journal.pone.0241268 |
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author | Chen, Fangfang Xiao, Meng Chen, Cheng Chen, Chen Yan, Ziwei Han, Huijie Zhang, Shuailei Yue, Feilong Gao, Rui Lv, Xiaoyi |
author_facet | Chen, Fangfang Xiao, Meng Chen, Cheng Chen, Chen Yan, Ziwei Han, Huijie Zhang, Shuailei Yue, Feilong Gao, Rui Lv, Xiaoyi |
author_sort | Chen, Fangfang |
collection | PubMed |
description | In this paper, a total of 20 sites of single nucleotide polymorphisms (SNPs) on the serotonin 3 receptor A gene (HTR3A) and B gene (HTR3B) are used for feature fusion with age, education and marital status information, and the grid search-support vector machine (GS-SVM), the convolutional neural network (CNN) and the convolutional neural network combined with long and short-term memory (CNN-LSTM) are used to classify and discriminate between alcohol-dependent patients (AD) and the non-alcohol-dependent control group. The results show that 19 SNPs combined with academic qualifications have the best discrimination effect. In the GS-SVM, the area under the receiver operating characteristic (ROC) curve (AUC) is 0.87, the AUC of CNN-LSTM is 0.88, and the performance of the CNN model is the best, with an AUC of 0.92. This study shows that the CNN model can more accurately discriminate AD than the SVM to treat patients in time. |
format | Online Article Text |
id | pubmed-7591038 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-75910382020-10-30 Discrimination of alcohol dependence based on the convolutional neural network Chen, Fangfang Xiao, Meng Chen, Cheng Chen, Chen Yan, Ziwei Han, Huijie Zhang, Shuailei Yue, Feilong Gao, Rui Lv, Xiaoyi PLoS One Research Article In this paper, a total of 20 sites of single nucleotide polymorphisms (SNPs) on the serotonin 3 receptor A gene (HTR3A) and B gene (HTR3B) are used for feature fusion with age, education and marital status information, and the grid search-support vector machine (GS-SVM), the convolutional neural network (CNN) and the convolutional neural network combined with long and short-term memory (CNN-LSTM) are used to classify and discriminate between alcohol-dependent patients (AD) and the non-alcohol-dependent control group. The results show that 19 SNPs combined with academic qualifications have the best discrimination effect. In the GS-SVM, the area under the receiver operating characteristic (ROC) curve (AUC) is 0.87, the AUC of CNN-LSTM is 0.88, and the performance of the CNN model is the best, with an AUC of 0.92. This study shows that the CNN model can more accurately discriminate AD than the SVM to treat patients in time. Public Library of Science 2020-10-27 /pmc/articles/PMC7591038/ /pubmed/33108388 http://dx.doi.org/10.1371/journal.pone.0241268 Text en © 2020 Chen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Chen, Fangfang Xiao, Meng Chen, Cheng Chen, Chen Yan, Ziwei Han, Huijie Zhang, Shuailei Yue, Feilong Gao, Rui Lv, Xiaoyi Discrimination of alcohol dependence based on the convolutional neural network |
title | Discrimination of alcohol dependence based on the convolutional neural network |
title_full | Discrimination of alcohol dependence based on the convolutional neural network |
title_fullStr | Discrimination of alcohol dependence based on the convolutional neural network |
title_full_unstemmed | Discrimination of alcohol dependence based on the convolutional neural network |
title_short | Discrimination of alcohol dependence based on the convolutional neural network |
title_sort | discrimination of alcohol dependence based on the convolutional neural network |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591038/ https://www.ncbi.nlm.nih.gov/pubmed/33108388 http://dx.doi.org/10.1371/journal.pone.0241268 |
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