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Discrimination of alcohol dependence based on the convolutional neural network

In this paper, a total of 20 sites of single nucleotide polymorphisms (SNPs) on the serotonin 3 receptor A gene (HTR3A) and B gene (HTR3B) are used for feature fusion with age, education and marital status information, and the grid search-support vector machine (GS-SVM), the convolutional neural net...

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Autores principales: Chen, Fangfang, Xiao, Meng, Chen, Cheng, Chen, Chen, Yan, Ziwei, Han, Huijie, Zhang, Shuailei, Yue, Feilong, Gao, Rui, Lv, Xiaoyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591038/
https://www.ncbi.nlm.nih.gov/pubmed/33108388
http://dx.doi.org/10.1371/journal.pone.0241268
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author Chen, Fangfang
Xiao, Meng
Chen, Cheng
Chen, Chen
Yan, Ziwei
Han, Huijie
Zhang, Shuailei
Yue, Feilong
Gao, Rui
Lv, Xiaoyi
author_facet Chen, Fangfang
Xiao, Meng
Chen, Cheng
Chen, Chen
Yan, Ziwei
Han, Huijie
Zhang, Shuailei
Yue, Feilong
Gao, Rui
Lv, Xiaoyi
author_sort Chen, Fangfang
collection PubMed
description In this paper, a total of 20 sites of single nucleotide polymorphisms (SNPs) on the serotonin 3 receptor A gene (HTR3A) and B gene (HTR3B) are used for feature fusion with age, education and marital status information, and the grid search-support vector machine (GS-SVM), the convolutional neural network (CNN) and the convolutional neural network combined with long and short-term memory (CNN-LSTM) are used to classify and discriminate between alcohol-dependent patients (AD) and the non-alcohol-dependent control group. The results show that 19 SNPs combined with academic qualifications have the best discrimination effect. In the GS-SVM, the area under the receiver operating characteristic (ROC) curve (AUC) is 0.87, the AUC of CNN-LSTM is 0.88, and the performance of the CNN model is the best, with an AUC of 0.92. This study shows that the CNN model can more accurately discriminate AD than the SVM to treat patients in time.
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spelling pubmed-75910382020-10-30 Discrimination of alcohol dependence based on the convolutional neural network Chen, Fangfang Xiao, Meng Chen, Cheng Chen, Chen Yan, Ziwei Han, Huijie Zhang, Shuailei Yue, Feilong Gao, Rui Lv, Xiaoyi PLoS One Research Article In this paper, a total of 20 sites of single nucleotide polymorphisms (SNPs) on the serotonin 3 receptor A gene (HTR3A) and B gene (HTR3B) are used for feature fusion with age, education and marital status information, and the grid search-support vector machine (GS-SVM), the convolutional neural network (CNN) and the convolutional neural network combined with long and short-term memory (CNN-LSTM) are used to classify and discriminate between alcohol-dependent patients (AD) and the non-alcohol-dependent control group. The results show that 19 SNPs combined with academic qualifications have the best discrimination effect. In the GS-SVM, the area under the receiver operating characteristic (ROC) curve (AUC) is 0.87, the AUC of CNN-LSTM is 0.88, and the performance of the CNN model is the best, with an AUC of 0.92. This study shows that the CNN model can more accurately discriminate AD than the SVM to treat patients in time. Public Library of Science 2020-10-27 /pmc/articles/PMC7591038/ /pubmed/33108388 http://dx.doi.org/10.1371/journal.pone.0241268 Text en © 2020 Chen et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Chen, Fangfang
Xiao, Meng
Chen, Cheng
Chen, Chen
Yan, Ziwei
Han, Huijie
Zhang, Shuailei
Yue, Feilong
Gao, Rui
Lv, Xiaoyi
Discrimination of alcohol dependence based on the convolutional neural network
title Discrimination of alcohol dependence based on the convolutional neural network
title_full Discrimination of alcohol dependence based on the convolutional neural network
title_fullStr Discrimination of alcohol dependence based on the convolutional neural network
title_full_unstemmed Discrimination of alcohol dependence based on the convolutional neural network
title_short Discrimination of alcohol dependence based on the convolutional neural network
title_sort discrimination of alcohol dependence based on the convolutional neural network
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591038/
https://www.ncbi.nlm.nih.gov/pubmed/33108388
http://dx.doi.org/10.1371/journal.pone.0241268
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