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To Develop and Validate the Combination of RNA Methylation Regulators for the Prognosis of Patients with Gastric Cancer
BACKGROUND: Gastric cancer (GC) accounts for high mortality. RNA methylation has recently gained interest as markers in specific tumors. This study aimed to uncover the function of the roles of 25 RNA methylation regulators in GC. METHODS: RNA sequence and clinical data were downloaded from The Canc...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591098/ https://www.ncbi.nlm.nih.gov/pubmed/33122917 http://dx.doi.org/10.2147/OTT.S276239 |
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author | Zhang, Jun Piao, Hai-yan Wang, Yue Meng, Xiang-yu Yang, Dong Zhao, Yan Zheng, Zhi-chao |
author_facet | Zhang, Jun Piao, Hai-yan Wang, Yue Meng, Xiang-yu Yang, Dong Zhao, Yan Zheng, Zhi-chao |
author_sort | Zhang, Jun |
collection | PubMed |
description | BACKGROUND: Gastric cancer (GC) accounts for high mortality. RNA methylation has recently gained interest as markers in specific tumors. This study aimed to uncover the function of the roles of 25 RNA methylation regulators in GC. METHODS: RNA sequence and clinical data were downloaded from The Cancer Genome Atlas (TCGA) database. “STRING” and R were performed to analyze the correlation among the methylase. COX and LASSO were performed to screen for prognostic associated RNA methylation regulators. A prognostic model was established based on the expression of methylase. RT-PCR and immunohistochemistry detected the expression of methylase in GC cells and tissue. Kaplan–Meier curve and Cox analysis were applied to evaluate the effectiveness of the model. RESULTS: The prediction model was established based on the expression of m6A RNA methylation regulators FTO (fat mass and obesity-associated) and RBM15 (RNA binding motif protein 15). Based on the model, GC patients were divided into “high risk” and “low risk” groups to compare the differences in survival. The model was re-evaluated with the clinical data of our center. CONCLUSION: The two-methylase combination model was an independent prognostic factor of GC. |
format | Online Article Text |
id | pubmed-7591098 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-75910982020-10-28 To Develop and Validate the Combination of RNA Methylation Regulators for the Prognosis of Patients with Gastric Cancer Zhang, Jun Piao, Hai-yan Wang, Yue Meng, Xiang-yu Yang, Dong Zhao, Yan Zheng, Zhi-chao Onco Targets Ther Original Research BACKGROUND: Gastric cancer (GC) accounts for high mortality. RNA methylation has recently gained interest as markers in specific tumors. This study aimed to uncover the function of the roles of 25 RNA methylation regulators in GC. METHODS: RNA sequence and clinical data were downloaded from The Cancer Genome Atlas (TCGA) database. “STRING” and R were performed to analyze the correlation among the methylase. COX and LASSO were performed to screen for prognostic associated RNA methylation regulators. A prognostic model was established based on the expression of methylase. RT-PCR and immunohistochemistry detected the expression of methylase in GC cells and tissue. Kaplan–Meier curve and Cox analysis were applied to evaluate the effectiveness of the model. RESULTS: The prediction model was established based on the expression of m6A RNA methylation regulators FTO (fat mass and obesity-associated) and RBM15 (RNA binding motif protein 15). Based on the model, GC patients were divided into “high risk” and “low risk” groups to compare the differences in survival. The model was re-evaluated with the clinical data of our center. CONCLUSION: The two-methylase combination model was an independent prognostic factor of GC. Dove 2020-10-23 /pmc/articles/PMC7591098/ /pubmed/33122917 http://dx.doi.org/10.2147/OTT.S276239 Text en © 2020 Zhang et al. http://creativecommons.org/licenses/by-nc/3.0/ This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Zhang, Jun Piao, Hai-yan Wang, Yue Meng, Xiang-yu Yang, Dong Zhao, Yan Zheng, Zhi-chao To Develop and Validate the Combination of RNA Methylation Regulators for the Prognosis of Patients with Gastric Cancer |
title | To Develop and Validate the Combination of RNA Methylation Regulators for the Prognosis of Patients with Gastric Cancer |
title_full | To Develop and Validate the Combination of RNA Methylation Regulators for the Prognosis of Patients with Gastric Cancer |
title_fullStr | To Develop and Validate the Combination of RNA Methylation Regulators for the Prognosis of Patients with Gastric Cancer |
title_full_unstemmed | To Develop and Validate the Combination of RNA Methylation Regulators for the Prognosis of Patients with Gastric Cancer |
title_short | To Develop and Validate the Combination of RNA Methylation Regulators for the Prognosis of Patients with Gastric Cancer |
title_sort | to develop and validate the combination of rna methylation regulators for the prognosis of patients with gastric cancer |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591098/ https://www.ncbi.nlm.nih.gov/pubmed/33122917 http://dx.doi.org/10.2147/OTT.S276239 |
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