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Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection

The correct identification of filamentous fungi is challenging. We evaluated the performance of the VITEK MS v3.0 system (bioMérieux, Marcy-l’Étoile, France) for the identification of a wide spectrum of clinically relevant filamentous fungi using a Korean collection. Strains that were added to the u...

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Autores principales: Shin, Ju Hyeon, Kim, Soo Hyun, Lee, Dain, Lee, Seung Yeob, Chun, Sejong, Lee, Jun Hyung, Won, Eun Jeong, Choi, Hyun Jung, Choi, Hyun Woo, Kee, Seung Jung, Shin, Myung Geun, Shin, Jong Hee
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korean Society for Laboratory Medicine 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591280/
https://www.ncbi.nlm.nih.gov/pubmed/33063683
http://dx.doi.org/10.3343/alm.2021.41.2.214
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author Shin, Ju Hyeon
Kim, Soo Hyun
Lee, Dain
Lee, Seung Yeob
Chun, Sejong
Lee, Jun Hyung
Won, Eun Jeong
Choi, Hyun Jung
Choi, Hyun Woo
Kee, Seung Jung
Shin, Myung Geun
Shin, Jong Hee
author_facet Shin, Ju Hyeon
Kim, Soo Hyun
Lee, Dain
Lee, Seung Yeob
Chun, Sejong
Lee, Jun Hyung
Won, Eun Jeong
Choi, Hyun Jung
Choi, Hyun Woo
Kee, Seung Jung
Shin, Myung Geun
Shin, Jong Hee
author_sort Shin, Ju Hyeon
collection PubMed
description The correct identification of filamentous fungi is challenging. We evaluated the performance of the VITEK MS v3.0 system (bioMérieux, Marcy-l’Étoile, France) for the identification of a wide spectrum of clinically relevant filamentous fungi using a Korean collection. Strains that were added to the upgraded v3.2 database were additionally identified by the VITEK MS v3.2 system. Of the 105 tested isolates, including 37 Aspergillus (nine species), 41 dermatophytes (seven species), and 27 other molds (17 species), 43 (41.0%) showed “no identification” or “multiple species identification” results at the initial VITEK MS testing; these isolates were retested using the same method. Compared with sequence-based identification, the correct identification rate using VITEK MS for Aspergillus, dermatophytes, other molds, and total mold isolates was 67.6%, 56.1%, 48.1%, and 58.1% at the initial testing and 94.6%, 78.0%, 55.6%, and 78.1% with retesting, respectively. Following retesting, 19 (18.1%) and two (1.9%) isolates showed “no identification” and “misidentification” results, respectively. VITEK MS reliably identified various filamentous fungi recovered in Korea, with a very low rate of misidentification.
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spelling pubmed-75912802021-03-01 Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection Shin, Ju Hyeon Kim, Soo Hyun Lee, Dain Lee, Seung Yeob Chun, Sejong Lee, Jun Hyung Won, Eun Jeong Choi, Hyun Jung Choi, Hyun Woo Kee, Seung Jung Shin, Myung Geun Shin, Jong Hee Ann Lab Med Brief Communication The correct identification of filamentous fungi is challenging. We evaluated the performance of the VITEK MS v3.0 system (bioMérieux, Marcy-l’Étoile, France) for the identification of a wide spectrum of clinically relevant filamentous fungi using a Korean collection. Strains that were added to the upgraded v3.2 database were additionally identified by the VITEK MS v3.2 system. Of the 105 tested isolates, including 37 Aspergillus (nine species), 41 dermatophytes (seven species), and 27 other molds (17 species), 43 (41.0%) showed “no identification” or “multiple species identification” results at the initial VITEK MS testing; these isolates were retested using the same method. Compared with sequence-based identification, the correct identification rate using VITEK MS for Aspergillus, dermatophytes, other molds, and total mold isolates was 67.6%, 56.1%, 48.1%, and 58.1% at the initial testing and 94.6%, 78.0%, 55.6%, and 78.1% with retesting, respectively. Following retesting, 19 (18.1%) and two (1.9%) isolates showed “no identification” and “misidentification” results, respectively. VITEK MS reliably identified various filamentous fungi recovered in Korea, with a very low rate of misidentification. Korean Society for Laboratory Medicine 2021-03-01 2021-03-01 /pmc/articles/PMC7591280/ /pubmed/33063683 http://dx.doi.org/10.3343/alm.2021.41.2.214 Text en © Korean Society for Laboratory Medicine https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0 (https://creativecommons.org/licenses/by-nc/4.0/) ) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Brief Communication
Shin, Ju Hyeon
Kim, Soo Hyun
Lee, Dain
Lee, Seung Yeob
Chun, Sejong
Lee, Jun Hyung
Won, Eun Jeong
Choi, Hyun Jung
Choi, Hyun Woo
Kee, Seung Jung
Shin, Myung Geun
Shin, Jong Hee
Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection
title Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection
title_full Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection
title_fullStr Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection
title_full_unstemmed Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection
title_short Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection
title_sort performance evaluation of vitek ms for the identification of a wide spectrum of clinically relevant filamentous fungi using a korean collection
topic Brief Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591280/
https://www.ncbi.nlm.nih.gov/pubmed/33063683
http://dx.doi.org/10.3343/alm.2021.41.2.214
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