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Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection
The correct identification of filamentous fungi is challenging. We evaluated the performance of the VITEK MS v3.0 system (bioMérieux, Marcy-l’Étoile, France) for the identification of a wide spectrum of clinically relevant filamentous fungi using a Korean collection. Strains that were added to the u...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Korean Society for Laboratory Medicine
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591280/ https://www.ncbi.nlm.nih.gov/pubmed/33063683 http://dx.doi.org/10.3343/alm.2021.41.2.214 |
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author | Shin, Ju Hyeon Kim, Soo Hyun Lee, Dain Lee, Seung Yeob Chun, Sejong Lee, Jun Hyung Won, Eun Jeong Choi, Hyun Jung Choi, Hyun Woo Kee, Seung Jung Shin, Myung Geun Shin, Jong Hee |
author_facet | Shin, Ju Hyeon Kim, Soo Hyun Lee, Dain Lee, Seung Yeob Chun, Sejong Lee, Jun Hyung Won, Eun Jeong Choi, Hyun Jung Choi, Hyun Woo Kee, Seung Jung Shin, Myung Geun Shin, Jong Hee |
author_sort | Shin, Ju Hyeon |
collection | PubMed |
description | The correct identification of filamentous fungi is challenging. We evaluated the performance of the VITEK MS v3.0 system (bioMérieux, Marcy-l’Étoile, France) for the identification of a wide spectrum of clinically relevant filamentous fungi using a Korean collection. Strains that were added to the upgraded v3.2 database were additionally identified by the VITEK MS v3.2 system. Of the 105 tested isolates, including 37 Aspergillus (nine species), 41 dermatophytes (seven species), and 27 other molds (17 species), 43 (41.0%) showed “no identification” or “multiple species identification” results at the initial VITEK MS testing; these isolates were retested using the same method. Compared with sequence-based identification, the correct identification rate using VITEK MS for Aspergillus, dermatophytes, other molds, and total mold isolates was 67.6%, 56.1%, 48.1%, and 58.1% at the initial testing and 94.6%, 78.0%, 55.6%, and 78.1% with retesting, respectively. Following retesting, 19 (18.1%) and two (1.9%) isolates showed “no identification” and “misidentification” results, respectively. VITEK MS reliably identified various filamentous fungi recovered in Korea, with a very low rate of misidentification. |
format | Online Article Text |
id | pubmed-7591280 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Korean Society for Laboratory Medicine |
record_format | MEDLINE/PubMed |
spelling | pubmed-75912802021-03-01 Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection Shin, Ju Hyeon Kim, Soo Hyun Lee, Dain Lee, Seung Yeob Chun, Sejong Lee, Jun Hyung Won, Eun Jeong Choi, Hyun Jung Choi, Hyun Woo Kee, Seung Jung Shin, Myung Geun Shin, Jong Hee Ann Lab Med Brief Communication The correct identification of filamentous fungi is challenging. We evaluated the performance of the VITEK MS v3.0 system (bioMérieux, Marcy-l’Étoile, France) for the identification of a wide spectrum of clinically relevant filamentous fungi using a Korean collection. Strains that were added to the upgraded v3.2 database were additionally identified by the VITEK MS v3.2 system. Of the 105 tested isolates, including 37 Aspergillus (nine species), 41 dermatophytes (seven species), and 27 other molds (17 species), 43 (41.0%) showed “no identification” or “multiple species identification” results at the initial VITEK MS testing; these isolates were retested using the same method. Compared with sequence-based identification, the correct identification rate using VITEK MS for Aspergillus, dermatophytes, other molds, and total mold isolates was 67.6%, 56.1%, 48.1%, and 58.1% at the initial testing and 94.6%, 78.0%, 55.6%, and 78.1% with retesting, respectively. Following retesting, 19 (18.1%) and two (1.9%) isolates showed “no identification” and “misidentification” results, respectively. VITEK MS reliably identified various filamentous fungi recovered in Korea, with a very low rate of misidentification. Korean Society for Laboratory Medicine 2021-03-01 2021-03-01 /pmc/articles/PMC7591280/ /pubmed/33063683 http://dx.doi.org/10.3343/alm.2021.41.2.214 Text en © Korean Society for Laboratory Medicine https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0 (https://creativecommons.org/licenses/by-nc/4.0/) ) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Brief Communication Shin, Ju Hyeon Kim, Soo Hyun Lee, Dain Lee, Seung Yeob Chun, Sejong Lee, Jun Hyung Won, Eun Jeong Choi, Hyun Jung Choi, Hyun Woo Kee, Seung Jung Shin, Myung Geun Shin, Jong Hee Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection |
title | Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection |
title_full | Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection |
title_fullStr | Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection |
title_full_unstemmed | Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection |
title_short | Performance Evaluation of VITEK MS for the Identification of a Wide Spectrum of Clinically Relevant Filamentous Fungi Using a Korean Collection |
title_sort | performance evaluation of vitek ms for the identification of a wide spectrum of clinically relevant filamentous fungi using a korean collection |
topic | Brief Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591280/ https://www.ncbi.nlm.nih.gov/pubmed/33063683 http://dx.doi.org/10.3343/alm.2021.41.2.214 |
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