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The importance of standardisation – COVID-19 CT & Radiograph Image Data Stock for deep learning purpose

With the number of affected individuals still growing world-wide, the research on COVID-19 is continuously expanding. The deep learning community concentrates their efforts on exploring if neural networks can potentially support the diagnosis using CT and radiograph images of patients’ lungs. The tw...

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Autores principales: Misztal, Krzysztof, Pocha, Agnieszka, Durak-Kozica, Martyna, Wątor, Michał, Kubica-Misztal, Aleksandra, Hartel, Marcin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591316/
https://www.ncbi.nlm.nih.gov/pubmed/33161334
http://dx.doi.org/10.1016/j.compbiomed.2020.104092
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author Misztal, Krzysztof
Pocha, Agnieszka
Durak-Kozica, Martyna
Wątor, Michał
Kubica-Misztal, Aleksandra
Hartel, Marcin
author_facet Misztal, Krzysztof
Pocha, Agnieszka
Durak-Kozica, Martyna
Wątor, Michał
Kubica-Misztal, Aleksandra
Hartel, Marcin
author_sort Misztal, Krzysztof
collection PubMed
description With the number of affected individuals still growing world-wide, the research on COVID-19 is continuously expanding. The deep learning community concentrates their efforts on exploring if neural networks can potentially support the diagnosis using CT and radiograph images of patients’ lungs. The two most popular publicly available datasets for COVID-19 classification are COVID-CT and COVID-19 Image Data Collection. In this work, we propose a new dataset which we call COVID-19 CT & Radiograph Image Data Stock. It contains both CT and radiograph samples of COVID-19 lung findings and combines them with additional data to ensure a sufficient number of diverse COVID-19-negative samples. Moreover, it is supplemented with a carefully defined split. The aim of COVID-19 CT & Radiograph Image Data Stock is to create a public pool of CT and radiograph images of lungs to increase the efficiency of distinguishing COVID-19 disease from other types of pneumonia and from healthy chest. We hope that the creation of this dataset would allow standardisation of the approach taken for training deep neural networks for COVID-19 classification and eventually for building more reliable models.
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spelling pubmed-75913162020-10-28 The importance of standardisation – COVID-19 CT & Radiograph Image Data Stock for deep learning purpose Misztal, Krzysztof Pocha, Agnieszka Durak-Kozica, Martyna Wątor, Michał Kubica-Misztal, Aleksandra Hartel, Marcin Comput Biol Med Article With the number of affected individuals still growing world-wide, the research on COVID-19 is continuously expanding. The deep learning community concentrates their efforts on exploring if neural networks can potentially support the diagnosis using CT and radiograph images of patients’ lungs. The two most popular publicly available datasets for COVID-19 classification are COVID-CT and COVID-19 Image Data Collection. In this work, we propose a new dataset which we call COVID-19 CT & Radiograph Image Data Stock. It contains both CT and radiograph samples of COVID-19 lung findings and combines them with additional data to ensure a sufficient number of diverse COVID-19-negative samples. Moreover, it is supplemented with a carefully defined split. The aim of COVID-19 CT & Radiograph Image Data Stock is to create a public pool of CT and radiograph images of lungs to increase the efficiency of distinguishing COVID-19 disease from other types of pneumonia and from healthy chest. We hope that the creation of this dataset would allow standardisation of the approach taken for training deep neural networks for COVID-19 classification and eventually for building more reliable models. Elsevier Ltd. 2020-12 2020-10-28 /pmc/articles/PMC7591316/ /pubmed/33161334 http://dx.doi.org/10.1016/j.compbiomed.2020.104092 Text en © 2020 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Misztal, Krzysztof
Pocha, Agnieszka
Durak-Kozica, Martyna
Wątor, Michał
Kubica-Misztal, Aleksandra
Hartel, Marcin
The importance of standardisation – COVID-19 CT & Radiograph Image Data Stock for deep learning purpose
title The importance of standardisation – COVID-19 CT & Radiograph Image Data Stock for deep learning purpose
title_full The importance of standardisation – COVID-19 CT & Radiograph Image Data Stock for deep learning purpose
title_fullStr The importance of standardisation – COVID-19 CT & Radiograph Image Data Stock for deep learning purpose
title_full_unstemmed The importance of standardisation – COVID-19 CT & Radiograph Image Data Stock for deep learning purpose
title_short The importance of standardisation – COVID-19 CT & Radiograph Image Data Stock for deep learning purpose
title_sort importance of standardisation – covid-19 ct & radiograph image data stock for deep learning purpose
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591316/
https://www.ncbi.nlm.nih.gov/pubmed/33161334
http://dx.doi.org/10.1016/j.compbiomed.2020.104092
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