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A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma

BACKGROUND: Recent research has shown that immune-related lncRNA plays a crucial part in the tumor immune microenvironment. This study tried to identify immune-related lncRNAs and construct a robust prediction model to increase the predicted value of lung adenocarcinoma (LUAD). METHODS: RNA expressi...

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Autores principales: Li, Jian-Ping, Li, Rui, Liu, Xiao, Huo, Chen, Liu, Ting-Ting, Yao, Jie, Qu, Yi-Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591457/
https://www.ncbi.nlm.nih.gov/pubmed/33163400
http://dx.doi.org/10.3389/fonc.2020.560779
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author Li, Jian-Ping
Li, Rui
Liu, Xiao
Huo, Chen
Liu, Ting-Ting
Yao, Jie
Qu, Yi-Qing
author_facet Li, Jian-Ping
Li, Rui
Liu, Xiao
Huo, Chen
Liu, Ting-Ting
Yao, Jie
Qu, Yi-Qing
author_sort Li, Jian-Ping
collection PubMed
description BACKGROUND: Recent research has shown that immune-related lncRNA plays a crucial part in the tumor immune microenvironment. This study tried to identify immune-related lncRNAs and construct a robust prediction model to increase the predicted value of lung adenocarcinoma (LUAD). METHODS: RNA expression data of LUAD were download from the Cancer Genome Atlas (TCGA) database. Immune genes were acquired from the Molecular Signatures Database (MSigDB). The immune gene related lncRNAs were acquired by the “limma R” package and Cytoscape3.7.1. Cox regression analysis was applied to construct this forecast model. The prognostic model was validated by the testing cohort which was acquired by the bootstrap method. RESULTS: A total of 551 lncRNA expression profiles including 497 LUAD tissues and 54 non-LUAD tissues were obtained. A total of 331 immune genes were acquired. The result of the Cox regression analysis showed that seven lncRNAs (AC022784-1, NKILA, AC026355-1, AC068338-3, LINC01843, SYNPR-AS1, and AC123595-1) can be performed to construct the prediction model to forecast the prognosis of LUAD. Kaplan–Meier curves indicated that our prediction model can distribute LUAD patients into two different risk groups (high and low) with significant statistical significance (P = 1.484e-07). Cox analysis and independent analysis illustrated that the seven-lncRNAs prediction model was an isolated factor by comparing it with other clinical variables. We validated the accuracy of our model in the testing dataset. Furthermore, the prognostic model also showed higher predictive efficiency than three other published prognostic models. The two different survival groups represented diverse immune features according to principal components analysis. GSEA analysis (gene set enrichment analysis) indicated that seven-lncRNAs signatures may be involved in the progression of tumorigenesis. CONCLUSIONS: We have established a seven immune-related lncRNAs prediction model. This prognostic model had significant clinical significance that increased the predicted value and guided the personalized treatment for LUAD patients.
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spelling pubmed-75914572020-11-05 A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma Li, Jian-Ping Li, Rui Liu, Xiao Huo, Chen Liu, Ting-Ting Yao, Jie Qu, Yi-Qing Front Oncol Oncology BACKGROUND: Recent research has shown that immune-related lncRNA plays a crucial part in the tumor immune microenvironment. This study tried to identify immune-related lncRNAs and construct a robust prediction model to increase the predicted value of lung adenocarcinoma (LUAD). METHODS: RNA expression data of LUAD were download from the Cancer Genome Atlas (TCGA) database. Immune genes were acquired from the Molecular Signatures Database (MSigDB). The immune gene related lncRNAs were acquired by the “limma R” package and Cytoscape3.7.1. Cox regression analysis was applied to construct this forecast model. The prognostic model was validated by the testing cohort which was acquired by the bootstrap method. RESULTS: A total of 551 lncRNA expression profiles including 497 LUAD tissues and 54 non-LUAD tissues were obtained. A total of 331 immune genes were acquired. The result of the Cox regression analysis showed that seven lncRNAs (AC022784-1, NKILA, AC026355-1, AC068338-3, LINC01843, SYNPR-AS1, and AC123595-1) can be performed to construct the prediction model to forecast the prognosis of LUAD. Kaplan–Meier curves indicated that our prediction model can distribute LUAD patients into two different risk groups (high and low) with significant statistical significance (P = 1.484e-07). Cox analysis and independent analysis illustrated that the seven-lncRNAs prediction model was an isolated factor by comparing it with other clinical variables. We validated the accuracy of our model in the testing dataset. Furthermore, the prognostic model also showed higher predictive efficiency than three other published prognostic models. The two different survival groups represented diverse immune features according to principal components analysis. GSEA analysis (gene set enrichment analysis) indicated that seven-lncRNAs signatures may be involved in the progression of tumorigenesis. CONCLUSIONS: We have established a seven immune-related lncRNAs prediction model. This prognostic model had significant clinical significance that increased the predicted value and guided the personalized treatment for LUAD patients. Frontiers Media S.A. 2020-10-14 /pmc/articles/PMC7591457/ /pubmed/33163400 http://dx.doi.org/10.3389/fonc.2020.560779 Text en Copyright © 2020 Li, Li, Liu, Huo, Liu, Yao and Qu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Li, Jian-Ping
Li, Rui
Liu, Xiao
Huo, Chen
Liu, Ting-Ting
Yao, Jie
Qu, Yi-Qing
A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma
title A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma
title_full A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma
title_fullStr A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma
title_full_unstemmed A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma
title_short A Seven Immune-Related lncRNAs Model to Increase the Predicted Value of Lung Adenocarcinoma
title_sort seven immune-related lncrnas model to increase the predicted value of lung adenocarcinoma
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591457/
https://www.ncbi.nlm.nih.gov/pubmed/33163400
http://dx.doi.org/10.3389/fonc.2020.560779
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