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Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning

Machine learning (ML) has shown its potential to improve patient care over the last decade. In organ transplantation, delayed graft function (DGF) remains a major concern in deceased donor kidney transplantation (DDKT). To this end, we harnessed ML to build personalized prognostic models to predict...

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Autores principales: Kawakita, Satoru, Beaumont, Jennifer L., Jucaud, Vadim, Everly, Matthew J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591492/
https://www.ncbi.nlm.nih.gov/pubmed/33110142
http://dx.doi.org/10.1038/s41598-020-75473-z
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author Kawakita, Satoru
Beaumont, Jennifer L.
Jucaud, Vadim
Everly, Matthew J.
author_facet Kawakita, Satoru
Beaumont, Jennifer L.
Jucaud, Vadim
Everly, Matthew J.
author_sort Kawakita, Satoru
collection PubMed
description Machine learning (ML) has shown its potential to improve patient care over the last decade. In organ transplantation, delayed graft function (DGF) remains a major concern in deceased donor kidney transplantation (DDKT). To this end, we harnessed ML to build personalized prognostic models to predict DGF. Registry data were obtained on adult DDKT recipients for model development (n = 55,044) and validation (n = 6176). Incidence rates of DGF were 25.1% and 26.3% for the development and validation sets, respectively. Twenty-six predictors were identified via recursive feature elimination with random forest. Five widely-used ML algorithms—logistic regression (LR), elastic net, random forest, artificial neural network (ANN), and extreme gradient boosting (XGB) were trained and compared with a baseline LR model fitted with previously identified risk factors. The new ML models, particularly ANN with the area under the receiver operating characteristic curve (ROC-AUC) of 0.732 and XGB with ROC-AUC of 0.735, exhibited superior performance to the baseline model (ROC-AUC = 0.705). This study demonstrates the use of ML as a viable strategy to enable personalized risk quantification for medical applications. If successfully implemented, our models may aid in both risk quantification for DGF prevention clinical trials and personalized clinical decision making.
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spelling pubmed-75914922020-10-28 Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning Kawakita, Satoru Beaumont, Jennifer L. Jucaud, Vadim Everly, Matthew J. Sci Rep Article Machine learning (ML) has shown its potential to improve patient care over the last decade. In organ transplantation, delayed graft function (DGF) remains a major concern in deceased donor kidney transplantation (DDKT). To this end, we harnessed ML to build personalized prognostic models to predict DGF. Registry data were obtained on adult DDKT recipients for model development (n = 55,044) and validation (n = 6176). Incidence rates of DGF were 25.1% and 26.3% for the development and validation sets, respectively. Twenty-six predictors were identified via recursive feature elimination with random forest. Five widely-used ML algorithms—logistic regression (LR), elastic net, random forest, artificial neural network (ANN), and extreme gradient boosting (XGB) were trained and compared with a baseline LR model fitted with previously identified risk factors. The new ML models, particularly ANN with the area under the receiver operating characteristic curve (ROC-AUC) of 0.732 and XGB with ROC-AUC of 0.735, exhibited superior performance to the baseline model (ROC-AUC = 0.705). This study demonstrates the use of ML as a viable strategy to enable personalized risk quantification for medical applications. If successfully implemented, our models may aid in both risk quantification for DGF prevention clinical trials and personalized clinical decision making. Nature Publishing Group UK 2020-10-27 /pmc/articles/PMC7591492/ /pubmed/33110142 http://dx.doi.org/10.1038/s41598-020-75473-z Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kawakita, Satoru
Beaumont, Jennifer L.
Jucaud, Vadim
Everly, Matthew J.
Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
title Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
title_full Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
title_fullStr Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
title_full_unstemmed Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
title_short Personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
title_sort personalized prediction of delayed graft function for recipients of deceased donor kidney transplants with machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591492/
https://www.ncbi.nlm.nih.gov/pubmed/33110142
http://dx.doi.org/10.1038/s41598-020-75473-z
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