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Six-lncRNA Immune Prognostic Signature for Cervical Cancer

BACKGROUND: This study searched for immune-related long noncoding RNAs (lncRNAs) to predict the prognosis of patients with cervical cancer. METHOD: We obtained immunologically relevant lncRNA expression profiles and clinical follow-up data from cervical cancer patients from The Cancer Genome Atlas d...

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Autores principales: Chen, Qian, Hu, Lang, Huang, Dongping, Chen, Kaihua, Qiu, Xiaoqiang, Qiu, Bingqing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591729/
https://www.ncbi.nlm.nih.gov/pubmed/33173530
http://dx.doi.org/10.3389/fgene.2020.533628
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author Chen, Qian
Hu, Lang
Huang, Dongping
Chen, Kaihua
Qiu, Xiaoqiang
Qiu, Bingqing
author_facet Chen, Qian
Hu, Lang
Huang, Dongping
Chen, Kaihua
Qiu, Xiaoqiang
Qiu, Bingqing
author_sort Chen, Qian
collection PubMed
description BACKGROUND: This study searched for immune-related long noncoding RNAs (lncRNAs) to predict the prognosis of patients with cervical cancer. METHOD: We obtained immunologically relevant lncRNA expression profiles and clinical follow-up data from cervical cancer patients from The Cancer Genome Atlas database and the Molecular Signatures Database. Cervical cancer patients were randomly divided into a training group, testing group and combined group. The immune prognostic signature was constructed by Least Absolute Shrinkage and Selection Operator Cox regression, prognosis was analyzed by Kaplan–Meier curves between different groups, and the accuracy of the prognostic model was assessed by receiver operating characteristic-area under the curve (ROC-AUC) analysis. RESULTS: A six-lncRNA immune prognostic signature (LIPS) was constructed to predict the prognosis of cervical cancer. The six lncRNAs are as follows: AC009065.8, LINC01871, MIR210HG, GEMIN7-AS1, GAS5-AS1, and DLEU1. A ROC-AUC analysis indicated that the model could predict the prognosis of cervical cancer patients in different subgroups. A Kaplan–Meier analysis showed that patients with high risk scores had a poor prognosis; these results were equally meaningful in the subgroup analyses. Risk scores differed depending on the clinical pathology and tumor grade and were independent risk factors for cervical cancer prognosis. Gene set enrichment analysis revealed an association between the LIPS and the immune response, Wnt signaling pathway, and TGF beta signaling pathway. CONCLUSION: Our study shows that the six-LIPS can predict the prognosis of cervical cancer and contribute to decisions regarding the immunotherapeutic strategy.
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spelling pubmed-75917292020-11-09 Six-lncRNA Immune Prognostic Signature for Cervical Cancer Chen, Qian Hu, Lang Huang, Dongping Chen, Kaihua Qiu, Xiaoqiang Qiu, Bingqing Front Genet Genetics BACKGROUND: This study searched for immune-related long noncoding RNAs (lncRNAs) to predict the prognosis of patients with cervical cancer. METHOD: We obtained immunologically relevant lncRNA expression profiles and clinical follow-up data from cervical cancer patients from The Cancer Genome Atlas database and the Molecular Signatures Database. Cervical cancer patients were randomly divided into a training group, testing group and combined group. The immune prognostic signature was constructed by Least Absolute Shrinkage and Selection Operator Cox regression, prognosis was analyzed by Kaplan–Meier curves between different groups, and the accuracy of the prognostic model was assessed by receiver operating characteristic-area under the curve (ROC-AUC) analysis. RESULTS: A six-lncRNA immune prognostic signature (LIPS) was constructed to predict the prognosis of cervical cancer. The six lncRNAs are as follows: AC009065.8, LINC01871, MIR210HG, GEMIN7-AS1, GAS5-AS1, and DLEU1. A ROC-AUC analysis indicated that the model could predict the prognosis of cervical cancer patients in different subgroups. A Kaplan–Meier analysis showed that patients with high risk scores had a poor prognosis; these results were equally meaningful in the subgroup analyses. Risk scores differed depending on the clinical pathology and tumor grade and were independent risk factors for cervical cancer prognosis. Gene set enrichment analysis revealed an association between the LIPS and the immune response, Wnt signaling pathway, and TGF beta signaling pathway. CONCLUSION: Our study shows that the six-LIPS can predict the prognosis of cervical cancer and contribute to decisions regarding the immunotherapeutic strategy. Frontiers Media S.A. 2020-10-14 /pmc/articles/PMC7591729/ /pubmed/33173530 http://dx.doi.org/10.3389/fgene.2020.533628 Text en Copyright © 2020 Chen, Hu, Huang, Chen, Qiu and Qiu. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Chen, Qian
Hu, Lang
Huang, Dongping
Chen, Kaihua
Qiu, Xiaoqiang
Qiu, Bingqing
Six-lncRNA Immune Prognostic Signature for Cervical Cancer
title Six-lncRNA Immune Prognostic Signature for Cervical Cancer
title_full Six-lncRNA Immune Prognostic Signature for Cervical Cancer
title_fullStr Six-lncRNA Immune Prognostic Signature for Cervical Cancer
title_full_unstemmed Six-lncRNA Immune Prognostic Signature for Cervical Cancer
title_short Six-lncRNA Immune Prognostic Signature for Cervical Cancer
title_sort six-lncrna immune prognostic signature for cervical cancer
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7591729/
https://www.ncbi.nlm.nih.gov/pubmed/33173530
http://dx.doi.org/10.3389/fgene.2020.533628
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