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Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI

PURPOSE: The aim of this study was to develop and assess the performance of supervised machine learning technique to classify magnetic resonance imaging (MRI) voxels as cancerous or noncancerous using noncontrast multiparametric MRI (mp‐MRI), comprised of T2‐weighted imaging (T2WI), diffusion‐weight...

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Autores principales: Gholizadeh, Neda, Simpson, John, Ramadan, Saadallah, Denham, Jim, Lau, Peter, Siddique, Sabbir, Dowling, Jason, Welsh, James, Chalup, Stephan, Greer, Peter B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7592985/
https://www.ncbi.nlm.nih.gov/pubmed/32770600
http://dx.doi.org/10.1002/acm2.12992
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author Gholizadeh, Neda
Simpson, John
Ramadan, Saadallah
Denham, Jim
Lau, Peter
Siddique, Sabbir
Dowling, Jason
Welsh, James
Chalup, Stephan
Greer, Peter B.
author_facet Gholizadeh, Neda
Simpson, John
Ramadan, Saadallah
Denham, Jim
Lau, Peter
Siddique, Sabbir
Dowling, Jason
Welsh, James
Chalup, Stephan
Greer, Peter B.
author_sort Gholizadeh, Neda
collection PubMed
description PURPOSE: The aim of this study was to develop and assess the performance of supervised machine learning technique to classify magnetic resonance imaging (MRI) voxels as cancerous or noncancerous using noncontrast multiparametric MRI (mp‐MRI), comprised of T2‐weighted imaging (T2WI), diffusion‐weighted imaging (DWI), and advanced diffusion tensor imaging (DTI) parameters. MATERIALS AND METHODS: In this work, 191 radiomic features were extracted from mp‐MRI from prostate cancer patients. A comprehensive set of support vector machine (SVM) models for T2WI and mp‐MRI (T2WI + DWI, T2WI + DTI, and T2WI + DWI + DTI) were developed based on novel Bayesian parameters optimization method and validated using leave‐one‐patient‐out approach to eliminate any possible overfitting. The diagnostic performance of each model was evaluated using the area under the receiver operating characteristic curve (AUROC). The average sensitivity, specificity, and accuracy of the models were evaluated using the test data set and the corresponding binary maps generated. Finally, the SVM plus sigmoid function of the models with the highest performance were used to produce cancer probability maps. RESULTS: The T2WI + DWI + DTI models using the optimal feature subset achieved the best performance in prostate cancer detection, with the average AUROC , sensitivity, specificity, and accuracy of 0.93 ± 0.03, 0.85 ± 0.05, 0.82 ± 0.07, and 0.83 ± 0.04, respectively. The average diagnostic performance of T2WI + DTI models was slightly higher than T2WI + DWI models (+3.52%) using the optimal radiomic features. CONCLUSIONS: Combination of noncontrast mp‐MRI (T2WI, DWI, and DTI) features with the framework of a supervised classification technique and Bayesian optimization method are able to differentiate cancer from noncancer voxels with high accuracy and without administration of contrast agent. The addition of cancer probability maps provides additional functionality for image interpretation, lesion heterogeneity evaluation, and treatment management.
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spelling pubmed-75929852020-11-02 Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI Gholizadeh, Neda Simpson, John Ramadan, Saadallah Denham, Jim Lau, Peter Siddique, Sabbir Dowling, Jason Welsh, James Chalup, Stephan Greer, Peter B. J Appl Clin Med Phys Medical Imaging PURPOSE: The aim of this study was to develop and assess the performance of supervised machine learning technique to classify magnetic resonance imaging (MRI) voxels as cancerous or noncancerous using noncontrast multiparametric MRI (mp‐MRI), comprised of T2‐weighted imaging (T2WI), diffusion‐weighted imaging (DWI), and advanced diffusion tensor imaging (DTI) parameters. MATERIALS AND METHODS: In this work, 191 radiomic features were extracted from mp‐MRI from prostate cancer patients. A comprehensive set of support vector machine (SVM) models for T2WI and mp‐MRI (T2WI + DWI, T2WI + DTI, and T2WI + DWI + DTI) were developed based on novel Bayesian parameters optimization method and validated using leave‐one‐patient‐out approach to eliminate any possible overfitting. The diagnostic performance of each model was evaluated using the area under the receiver operating characteristic curve (AUROC). The average sensitivity, specificity, and accuracy of the models were evaluated using the test data set and the corresponding binary maps generated. Finally, the SVM plus sigmoid function of the models with the highest performance were used to produce cancer probability maps. RESULTS: The T2WI + DWI + DTI models using the optimal feature subset achieved the best performance in prostate cancer detection, with the average AUROC , sensitivity, specificity, and accuracy of 0.93 ± 0.03, 0.85 ± 0.05, 0.82 ± 0.07, and 0.83 ± 0.04, respectively. The average diagnostic performance of T2WI + DTI models was slightly higher than T2WI + DWI models (+3.52%) using the optimal radiomic features. CONCLUSIONS: Combination of noncontrast mp‐MRI (T2WI, DWI, and DTI) features with the framework of a supervised classification technique and Bayesian optimization method are able to differentiate cancer from noncancer voxels with high accuracy and without administration of contrast agent. The addition of cancer probability maps provides additional functionality for image interpretation, lesion heterogeneity evaluation, and treatment management. John Wiley and Sons Inc. 2020-08-08 /pmc/articles/PMC7592985/ /pubmed/32770600 http://dx.doi.org/10.1002/acm2.12992 Text en © 2020 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals LLC on behalf of American Association of Physicists in Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Medical Imaging
Gholizadeh, Neda
Simpson, John
Ramadan, Saadallah
Denham, Jim
Lau, Peter
Siddique, Sabbir
Dowling, Jason
Welsh, James
Chalup, Stephan
Greer, Peter B.
Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI
title Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI
title_full Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI
title_fullStr Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI
title_full_unstemmed Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI
title_short Voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric MRI
title_sort voxel‐based supervised machine learning of peripheral zone prostate cancer using noncontrast multiparametric mri
topic Medical Imaging
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7592985/
https://www.ncbi.nlm.nih.gov/pubmed/32770600
http://dx.doi.org/10.1002/acm2.12992
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