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A Non-destructive Method to Quantify Leaf Starch Content in Red Clover
Grassland-based ruminant livestock production provides a sustainable alternative to intensive production systems relying on concentrated feeds. However, grassland-based roughage often lacks the energy content required to meet the productivity potential of modern livestock breeds. Forage legumes, suc...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7593268/ https://www.ncbi.nlm.nih.gov/pubmed/33178239 http://dx.doi.org/10.3389/fpls.2020.569948 |
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author | Frey, Lea Antonia Baumann, Philipp Aasen, Helge Studer, Bruno Kölliker, Roland |
author_facet | Frey, Lea Antonia Baumann, Philipp Aasen, Helge Studer, Bruno Kölliker, Roland |
author_sort | Frey, Lea Antonia |
collection | PubMed |
description | Grassland-based ruminant livestock production provides a sustainable alternative to intensive production systems relying on concentrated feeds. However, grassland-based roughage often lacks the energy content required to meet the productivity potential of modern livestock breeds. Forage legumes, such as red clover, with increased starch content could partly replace maize and cereal supplements. However, breeding for increased starch content requires efficient phenotyping methods. This study is unique in evaluating a non-destructive hyperspectral imaging approach to estimate leaf starch content in red clover for enabling efficient development of high starch red clover genotypes. We assessed prediction performance of partial least square regression models (PLSR) using cross-validation, and validated model performance with an independent test set under controlled conditions. Starch content of the training set ranged from 0.1 to 120.3 mg g(–1) DW. The best cross-validated PLSR model explained 56% of the measured variation and yielded a root mean square error (RMSE) of 17 mg g(–1) DW. Model performance decreased when applying the trained model on the independent test set (RMSE = 29 mg g(–1) DW, R(2) = 0.36). Different variable selection methods did not increase model performance. Once validated in the field, the non-destructive spectral method presented here has the potential to detect large differences in leaf starch content of red clover genotypes. Breeding material could be sampled and selected according to their starch content without destroying the plant. |
format | Online Article Text |
id | pubmed-7593268 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-75932682020-11-10 A Non-destructive Method to Quantify Leaf Starch Content in Red Clover Frey, Lea Antonia Baumann, Philipp Aasen, Helge Studer, Bruno Kölliker, Roland Front Plant Sci Plant Science Grassland-based ruminant livestock production provides a sustainable alternative to intensive production systems relying on concentrated feeds. However, grassland-based roughage often lacks the energy content required to meet the productivity potential of modern livestock breeds. Forage legumes, such as red clover, with increased starch content could partly replace maize and cereal supplements. However, breeding for increased starch content requires efficient phenotyping methods. This study is unique in evaluating a non-destructive hyperspectral imaging approach to estimate leaf starch content in red clover for enabling efficient development of high starch red clover genotypes. We assessed prediction performance of partial least square regression models (PLSR) using cross-validation, and validated model performance with an independent test set under controlled conditions. Starch content of the training set ranged from 0.1 to 120.3 mg g(–1) DW. The best cross-validated PLSR model explained 56% of the measured variation and yielded a root mean square error (RMSE) of 17 mg g(–1) DW. Model performance decreased when applying the trained model on the independent test set (RMSE = 29 mg g(–1) DW, R(2) = 0.36). Different variable selection methods did not increase model performance. Once validated in the field, the non-destructive spectral method presented here has the potential to detect large differences in leaf starch content of red clover genotypes. Breeding material could be sampled and selected according to their starch content without destroying the plant. Frontiers Media S.A. 2020-10-15 /pmc/articles/PMC7593268/ /pubmed/33178239 http://dx.doi.org/10.3389/fpls.2020.569948 Text en Copyright © 2020 Frey, Baumann, Aasen, Studer and Kölliker. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Frey, Lea Antonia Baumann, Philipp Aasen, Helge Studer, Bruno Kölliker, Roland A Non-destructive Method to Quantify Leaf Starch Content in Red Clover |
title | A Non-destructive Method to Quantify Leaf Starch Content in Red Clover |
title_full | A Non-destructive Method to Quantify Leaf Starch Content in Red Clover |
title_fullStr | A Non-destructive Method to Quantify Leaf Starch Content in Red Clover |
title_full_unstemmed | A Non-destructive Method to Quantify Leaf Starch Content in Red Clover |
title_short | A Non-destructive Method to Quantify Leaf Starch Content in Red Clover |
title_sort | non-destructive method to quantify leaf starch content in red clover |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7593268/ https://www.ncbi.nlm.nih.gov/pubmed/33178239 http://dx.doi.org/10.3389/fpls.2020.569948 |
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