Cargando…

A Semi-Automated Workflow for FAIR Maturity Indicators in the Life Sciences

Data sharing and reuse are crucial to enhance scientific progress and maximize return of investments in science. Although attitudes are increasingly favorable, data reuse remains difficult due to lack of infrastructures, standards, and policies. The FAIR (findable, accessible, interoperable, reusabl...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ammar, Ammar, Bonaretti, Serena, Winckers, Laurent, Quik, Joris, Bakker, Martine, Maier, Dieter, Lynch, Iseult, van Rijn, Jeaphianne, Willighagen, Egon
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	MDPI 2020
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594074/ https://www.ncbi.nlm.nih.gov/pubmed/33092028 http://dx.doi.org/10.3390/nano10102068

Ejemplares similares

PSnpBind: a database of mutated binding site protein–ligand complexes constructed using a multithreaded virtual screening workflow
por: Ammar, Ammar, et al.
Publicado: (2022)

European Registry of Materials: global, unique identifiers for (undisclosed) nanomaterials
por: van Rijn, Jeaphianne, et al.
Publicado: (2022)

Reply to “FAIR chemical structure in the Journal of Cheminformatics”
por: Guha, Rajarshi, et al.
Publicado: (2021)

Investigating the Molecular Processes behind the Cell-Specific Toxicity Response to Titanium Dioxide Nanobelts
por: Winckers, Laurent A., et al.
Publicado: (2021)

PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity
por: Ammar, Ammar, et al.
Publicado: (2023)

CDK-Taverna: an open workflow environment for cheminformatics
por: Kuhn, Thomas, et al.
Publicado: (2010)

pyKNEEr: An image analysis workflow for open and reproducible research on femoral knee cartilage
por: Bonaretti, Serena, et al.
Publicado: (2020)

New developments on the cheminformatics open workflow environment CDK-Taverna
por: Truszkowski, Andreas, et al.
Publicado: (2011)

Ten quick tips for building FAIR workflows
por: de Visser, Casper, et al.
Publicado: (2023)

The FAIR Cookbook - the essential resource for and by FAIR doers
por: Rocca-Serra, Philippe, et al.
Publicado: (2023)

Sim2Ls: FAIR simulation workflows and data
por: Hunt, Martin, et al.
Publicado: (2022)

The AOP-DB RDF: Applying FAIR Principles to the Semantic Integration of AOP Data Using the Research Description Framework
por: Mortensen, Holly M., et al.
Publicado: (2022)

A semi-automated, KNIME-based workflow for biofilm assays
por: Leinweber, Katrin, et al.
Publicado: (2016)

Towards FAIR protocols and workflows: the OpenPREDICT use case
por: Celebi, Remzi, et al.
Publicado: (2020)

Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows
por: Eriksson, Olivia, et al.
Publicado: (2022)

WikiPathways: connecting communities
por: Martens, Marvin, et al.
Publicado: (2020)

Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data
por: Papadiamantis, Anastasios G., et al.
Publicado: (2020)

Evaluating FAIR maturity through a scalable, automated, community-governed framework
por: Wilkinson, Mark D., et al.
Publicado: (2019)

A semi-automated workflow for biodiversity data retrieval, cleaning, and quality control
por: Mathew, Cherian, et al.
Publicado: (2014)

FAIR data pipeline: provenance-driven data management for traceable scientific workflows
por: Mitchell, Sonia Natalie, et al.
Publicado: (2022)

Adoption of the Citation Typing Ontology by the Journal of Cheminformatics
por: Willighagen, Egon
Publicado: (2020)

Two years of explicit CiTO annotations
por: Willighagen, Egon
Publicado: (2023)

Semi-automated workflow for molecular pair analysis and QSAR-assisted transformation space expansion
por: Yang, Zi-Yi, et al.
Publicado: (2021)

Text mining to support abstract screening for knowledge syntheses: a semi-automated workflow
por: Pham, Ba’, et al.
Publicado: (2021)

Author Correction: Evaluating FAIR maturity through a scalable, automated, community-governed framework
por: Wilkinson, Mark D., et al.
Publicado: (2019)

Semi-automated quantification of hair cells in the mature mouse utricle
por: Sung, Cathy Yea Won, et al.
Publicado: (2022)

A semi-automated workflow solution for multimodal neuroimaging: application to patients with traumatic brain injury
por: Wong, Koon-Pong, et al.
Publicado: (2015)

New hardware and workflows for semi-automated correlative cryo-fluorescence and cryo-electron microscopy/tomography
por: Schorb, Martin, et al.
Publicado: (2017)

Construction of biological networks from unstructured information based on a semi-automated curation workflow
por: Szostak, Justyna, et al.
Publicado: (2015)

A new semi-automated workflow for chemical data retrieval and quality checking for modeling applications
por: Gadaleta, Domenico, et al.
Publicado: (2018)

A Semi-Automated Workflow for Brain Slice Histology Alignment, Registration, and Cell Quantification (SHARCQ)
por: Lauridsen, Kristoffer, et al.
Publicado: (2022)

Your Spreadsheets Can Be FAIR: A Tool and FAIRification Workflow for the eNanoMapper Database
por: Kochev, Nikolay, et al.
Publicado: (2020)

Helping to improve the practice of cheminformatics
por: Guha, Rajarshi, et al.
Publicado: (2017)

Learning cheminformatics
por: Guha, Rajarshi, et al.
Publicado: (2020)

Improved and semi-automated reductive β-elimination workflow for higher throughput protein O-glycosylation analysis
por: Kotsias, Maximilianos, et al.
Publicado: (2019)

Correction to: A new semi-automated workflow for chemical data retrieval and quality checking for modeling applications
por: Gadaleta, Domenico, et al.
Publicado: (2019)

A high-throughput semi-automated bone segmentation workflow for murine hindpaw micro-CT datasets
por: Kenney, H. Mark, et al.
Publicado: (2022)

Perspectives on automated composition of workflows in the life sciences
por: Lamprecht, Anna-Lena, et al.
Publicado: (2021)

Creating an Efficient Point-of-Care Ultrasound Workflow
por: Saati, Ammar, et al.
Publicado: (2020)

Text-Mining to Identify Gene Sets Involved in Biocorrosion by Sulfate-Reducing Bacteria: A Semi-Automated Workflow
por: Thakur, Payal, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_8a7vlu9fknrdumtm10sjh2n64o