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The Genome of the Cauliflower Coral Pocillopora verrucosa

Climate change and ocean warming threaten the persistence of corals worldwide. Genomic resources are critical to study the evolutionary trajectory, adaptive potential, and genetic distinctiveness of coral species. Here, we provide a reference genome of the cauliflower coral Pocillopora verrucosa, a...

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Autores principales: Buitrago-López, Carol, Mariappan, Kiruthiga G, Cárdenas, Anny, Gegner, Hagen M, Voolstra, Christian R
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594246/
https://www.ncbi.nlm.nih.gov/pubmed/32857844
http://dx.doi.org/10.1093/gbe/evaa184
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author Buitrago-López, Carol
Mariappan, Kiruthiga G
Cárdenas, Anny
Gegner, Hagen M
Voolstra, Christian R
author_facet Buitrago-López, Carol
Mariappan, Kiruthiga G
Cárdenas, Anny
Gegner, Hagen M
Voolstra, Christian R
author_sort Buitrago-López, Carol
collection PubMed
description Climate change and ocean warming threaten the persistence of corals worldwide. Genomic resources are critical to study the evolutionary trajectory, adaptive potential, and genetic distinctiveness of coral species. Here, we provide a reference genome of the cauliflower coral Pocillopora verrucosa, a broadly prevalent reef-building coral with important ecological roles in the maintenance of reefs across the Red Sea, the Indian Ocean, and the Pacific Ocean. The genome has an assembly size of 380,505,698 bp with a scaffold N50 of 333,696 bp and a contig N50 of 75,704 bp. The annotation of the assembled genome returned 27,439 gene models of which 89.88% have evidence of transcription from RNA-Seq data and 97.87% show homology to known genes. A high proportion of the genome (41.22%) comprised repetitive elements in comparison to other cnidarian genomes, in particular in relation to the small genome size of P. verrucosa.
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spelling pubmed-75942462020-11-03 The Genome of the Cauliflower Coral Pocillopora verrucosa Buitrago-López, Carol Mariappan, Kiruthiga G Cárdenas, Anny Gegner, Hagen M Voolstra, Christian R Genome Biol Evol Genome Report Climate change and ocean warming threaten the persistence of corals worldwide. Genomic resources are critical to study the evolutionary trajectory, adaptive potential, and genetic distinctiveness of coral species. Here, we provide a reference genome of the cauliflower coral Pocillopora verrucosa, a broadly prevalent reef-building coral with important ecological roles in the maintenance of reefs across the Red Sea, the Indian Ocean, and the Pacific Ocean. The genome has an assembly size of 380,505,698 bp with a scaffold N50 of 333,696 bp and a contig N50 of 75,704 bp. The annotation of the assembled genome returned 27,439 gene models of which 89.88% have evidence of transcription from RNA-Seq data and 97.87% show homology to known genes. A high proportion of the genome (41.22%) comprised repetitive elements in comparison to other cnidarian genomes, in particular in relation to the small genome size of P. verrucosa. Oxford University Press 2020-08-28 /pmc/articles/PMC7594246/ /pubmed/32857844 http://dx.doi.org/10.1093/gbe/evaa184 Text en © The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Genome Report
Buitrago-López, Carol
Mariappan, Kiruthiga G
Cárdenas, Anny
Gegner, Hagen M
Voolstra, Christian R
The Genome of the Cauliflower Coral Pocillopora verrucosa
title The Genome of the Cauliflower Coral Pocillopora verrucosa
title_full The Genome of the Cauliflower Coral Pocillopora verrucosa
title_fullStr The Genome of the Cauliflower Coral Pocillopora verrucosa
title_full_unstemmed The Genome of the Cauliflower Coral Pocillopora verrucosa
title_short The Genome of the Cauliflower Coral Pocillopora verrucosa
title_sort genome of the cauliflower coral pocillopora verrucosa
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594246/
https://www.ncbi.nlm.nih.gov/pubmed/32857844
http://dx.doi.org/10.1093/gbe/evaa184
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