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Pathological-Corneas Layer Segmentation and Thickness Measurement in OCT Images

PURPOSE: The purpose of this study was to propose a new algorithm for the segmentation and thickness measurement of pathological corneas with irregular layers using a two-stage graph search and ray tracing. METHODS: In the first stage, a graph, with only gradient edge-cost, is used to segment the ai...

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Autores principales: Elsawy, Amr, Gregori, Giovanni, Eleiwa, Taher, Abdel-Mottaleb, Mohamed, Shousha, Mohamed Abou
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Association for Research in Vision and Ophthalmology 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594599/
https://www.ncbi.nlm.nih.gov/pubmed/33173606
http://dx.doi.org/10.1167/tvst.9.11.24
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author Elsawy, Amr
Gregori, Giovanni
Eleiwa, Taher
Abdel-Mottaleb, Mohamed
Shousha, Mohamed Abou
author_facet Elsawy, Amr
Gregori, Giovanni
Eleiwa, Taher
Abdel-Mottaleb, Mohamed
Shousha, Mohamed Abou
author_sort Elsawy, Amr
collection PubMed
description PURPOSE: The purpose of this study was to propose a new algorithm for the segmentation and thickness measurement of pathological corneas with irregular layers using a two-stage graph search and ray tracing. METHODS: In the first stage, a graph, with only gradient edge-cost, is used to segment the air-epithelium and endothelium-aqueous boundaries. In the second stage, a graph, with gradient, directional, and multiplier edge-cost, is used to correct segmentation. The optical coherence tomography (OCT) image is flattened using the air-epithelium boundary and a graph search is used to segment the epithelium-Bowman's and Bowman's-stroma boundaries. Then, the OCT image is flattened using the endothelium-aqueous boundary and a graph search is used to segment the Descemet's membrane. Ray tracing is used to correct the inter-boundary distances, then the thickness is measured using the shortest distance. The proposed algorithm was trained and evaluated using 190 OCT images manually segmented by trained operators. RESULTS: The mean and standard deviation of the unsigned errors of the algorithm-operator and inter-operator were 0.89 ± 1.03 and 0.77 ± 0.68 pixels in segmentation and 3.62 ± 3.98 and 2.95 ± 2.52 µm in thickness measurement. CONCLUSIONS: Our proposed algorithm can produce accurate segmentation and thickness measurements compared with the manual operators. TRANSLATIONAL RELEVANCE: Our algorithm could be potentially useful in the clinical practice.
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spelling pubmed-75945992020-11-09 Pathological-Corneas Layer Segmentation and Thickness Measurement in OCT Images Elsawy, Amr Gregori, Giovanni Eleiwa, Taher Abdel-Mottaleb, Mohamed Shousha, Mohamed Abou Transl Vis Sci Technol Article PURPOSE: The purpose of this study was to propose a new algorithm for the segmentation and thickness measurement of pathological corneas with irregular layers using a two-stage graph search and ray tracing. METHODS: In the first stage, a graph, with only gradient edge-cost, is used to segment the air-epithelium and endothelium-aqueous boundaries. In the second stage, a graph, with gradient, directional, and multiplier edge-cost, is used to correct segmentation. The optical coherence tomography (OCT) image is flattened using the air-epithelium boundary and a graph search is used to segment the epithelium-Bowman's and Bowman's-stroma boundaries. Then, the OCT image is flattened using the endothelium-aqueous boundary and a graph search is used to segment the Descemet's membrane. Ray tracing is used to correct the inter-boundary distances, then the thickness is measured using the shortest distance. The proposed algorithm was trained and evaluated using 190 OCT images manually segmented by trained operators. RESULTS: The mean and standard deviation of the unsigned errors of the algorithm-operator and inter-operator were 0.89 ± 1.03 and 0.77 ± 0.68 pixels in segmentation and 3.62 ± 3.98 and 2.95 ± 2.52 µm in thickness measurement. CONCLUSIONS: Our proposed algorithm can produce accurate segmentation and thickness measurements compared with the manual operators. TRANSLATIONAL RELEVANCE: Our algorithm could be potentially useful in the clinical practice. The Association for Research in Vision and Ophthalmology 2020-10-21 /pmc/articles/PMC7594599/ /pubmed/33173606 http://dx.doi.org/10.1167/tvst.9.11.24 Text en Copyright 2020 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
spellingShingle Article
Elsawy, Amr
Gregori, Giovanni
Eleiwa, Taher
Abdel-Mottaleb, Mohamed
Shousha, Mohamed Abou
Pathological-Corneas Layer Segmentation and Thickness Measurement in OCT Images
title Pathological-Corneas Layer Segmentation and Thickness Measurement in OCT Images
title_full Pathological-Corneas Layer Segmentation and Thickness Measurement in OCT Images
title_fullStr Pathological-Corneas Layer Segmentation and Thickness Measurement in OCT Images
title_full_unstemmed Pathological-Corneas Layer Segmentation and Thickness Measurement in OCT Images
title_short Pathological-Corneas Layer Segmentation and Thickness Measurement in OCT Images
title_sort pathological-corneas layer segmentation and thickness measurement in oct images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594599/
https://www.ncbi.nlm.nih.gov/pubmed/33173606
http://dx.doi.org/10.1167/tvst.9.11.24
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