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Single-scale time-dependent window-sizes in sliding-window dynamic functional connectivity analysis: A validation study

During the past ten years, dynamic functional connectivity (FC) has been extensively studied using the sliding-window method. A fixed window-size is usually selected heuristically, since no consensus exists yet on choice of the optimal window-size. Furthermore, without a known ground-truth, the vali...

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Autores principales: Zhuang, Xiaowei, Yang, Zhengshi, Mishra, Virendra, Sreenivasan, Karthik, Bernick, Charles, Cordes, Dietmar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594665/
https://www.ncbi.nlm.nih.gov/pubmed/32615255
http://dx.doi.org/10.1016/j.neuroimage.2020.117111
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author Zhuang, Xiaowei
Yang, Zhengshi
Mishra, Virendra
Sreenivasan, Karthik
Bernick, Charles
Cordes, Dietmar
author_facet Zhuang, Xiaowei
Yang, Zhengshi
Mishra, Virendra
Sreenivasan, Karthik
Bernick, Charles
Cordes, Dietmar
author_sort Zhuang, Xiaowei
collection PubMed
description During the past ten years, dynamic functional connectivity (FC) has been extensively studied using the sliding-window method. A fixed window-size is usually selected heuristically, since no consensus exists yet on choice of the optimal window-size. Furthermore, without a known ground-truth, the validity of the computed dynamic FC remains unclear and questionable. In this study, we computed single-scale time-dependent (SSTD) window-sizes for the sliding-window method. SSTD window-sizes were based on the frequency content at every time point of a time series and were computed without any prior information. Therefore, they were time-dependent and data-driven. Using simulated sinusoidal time series with frequency shifts, we demonstrated that SSTD window-sizes captured the time-dependent period (inverse of frequency) information at every time point. We further validated the dynamic FC values computed with SSTD window-sizes with both a classification analysis using fMRI data with a low sampling rate and a regression analysis using fMRI data with a high sampling rate. Specifically, we achieved both a higher classification accuracy in predicting cognitive impairment status in fighters and a larger explained behavioral variance in healthy young adults when using dynamic FC matrices computed with SSTD window-sizes as features, as compared to using dynamic FC matrices computed with the conventional fixed window-sizes. Overall, our study computed and validated SSTD window-sizes in the sliding-window method for dynamic FC analysis. Our results demonstrate that dynamic FC matrices computed with SSTD window-sizes can capture more temporal dynamic information related to behavior and cognitive function.
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spelling pubmed-75946652020-10-29 Single-scale time-dependent window-sizes in sliding-window dynamic functional connectivity analysis: A validation study Zhuang, Xiaowei Yang, Zhengshi Mishra, Virendra Sreenivasan, Karthik Bernick, Charles Cordes, Dietmar Neuroimage Article During the past ten years, dynamic functional connectivity (FC) has been extensively studied using the sliding-window method. A fixed window-size is usually selected heuristically, since no consensus exists yet on choice of the optimal window-size. Furthermore, without a known ground-truth, the validity of the computed dynamic FC remains unclear and questionable. In this study, we computed single-scale time-dependent (SSTD) window-sizes for the sliding-window method. SSTD window-sizes were based on the frequency content at every time point of a time series and were computed without any prior information. Therefore, they were time-dependent and data-driven. Using simulated sinusoidal time series with frequency shifts, we demonstrated that SSTD window-sizes captured the time-dependent period (inverse of frequency) information at every time point. We further validated the dynamic FC values computed with SSTD window-sizes with both a classification analysis using fMRI data with a low sampling rate and a regression analysis using fMRI data with a high sampling rate. Specifically, we achieved both a higher classification accuracy in predicting cognitive impairment status in fighters and a larger explained behavioral variance in healthy young adults when using dynamic FC matrices computed with SSTD window-sizes as features, as compared to using dynamic FC matrices computed with the conventional fixed window-sizes. Overall, our study computed and validated SSTD window-sizes in the sliding-window method for dynamic FC analysis. Our results demonstrate that dynamic FC matrices computed with SSTD window-sizes can capture more temporal dynamic information related to behavior and cognitive function. 2020-06-30 2020-10-15 /pmc/articles/PMC7594665/ /pubmed/32615255 http://dx.doi.org/10.1016/j.neuroimage.2020.117111 Text en This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Zhuang, Xiaowei
Yang, Zhengshi
Mishra, Virendra
Sreenivasan, Karthik
Bernick, Charles
Cordes, Dietmar
Single-scale time-dependent window-sizes in sliding-window dynamic functional connectivity analysis: A validation study
title Single-scale time-dependent window-sizes in sliding-window dynamic functional connectivity analysis: A validation study
title_full Single-scale time-dependent window-sizes in sliding-window dynamic functional connectivity analysis: A validation study
title_fullStr Single-scale time-dependent window-sizes in sliding-window dynamic functional connectivity analysis: A validation study
title_full_unstemmed Single-scale time-dependent window-sizes in sliding-window dynamic functional connectivity analysis: A validation study
title_short Single-scale time-dependent window-sizes in sliding-window dynamic functional connectivity analysis: A validation study
title_sort single-scale time-dependent window-sizes in sliding-window dynamic functional connectivity analysis: a validation study
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594665/
https://www.ncbi.nlm.nih.gov/pubmed/32615255
http://dx.doi.org/10.1016/j.neuroimage.2020.117111
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