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Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny
Colored rice is gaining popularity due to its use in creative agriculture and the value of healthy consumption. However, the quality and yield characteristics of most rice varieties still need to be improved. Revealing the genetic background of colored rice is of great significance to promote crop i...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594711/ https://www.ncbi.nlm.nih.gov/pubmed/33367045 http://dx.doi.org/10.1080/23802359.2020.1831992 |
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author | Fan, Jing Zhu, Wen-You Li, Zhong-Fang Zhang, Xin-Fen |
author_facet | Fan, Jing Zhu, Wen-You Li, Zhong-Fang Zhang, Xin-Fen |
author_sort | Fan, Jing |
collection | PubMed |
description | Colored rice is gaining popularity due to its use in creative agriculture and the value of healthy consumption. However, the quality and yield characteristics of most rice varieties still need to be improved. Revealing the genetic background of colored rice is of great significance to promote crop improvement. Here, the completed chloroplast (cp) genome sequence of yellow colored Oryza sativa voucher HSAGSDYD1802 was sequenced and reported. It was a 134,502 bp circular DNA with a typical quadripartite structure, consisting of two reverse repeat regions (IR(a) and IR(b), 20,804 bp) separated by a large single-copy region (LSC, 80,547 bp) and a small single-copy region (SSC, 12,347 bp). The total GC content was 39%. The cp genome encoded 146 genes, containing 100 protein-coding genes, 8 rRNAs, and 38 tRNA genes. Phylogenetic analysis indicated that O. sativa voucher HSAGSDYD1802 was closely related to O. sativa L. TN1, RP Bio-226 and IR8. This study enriches the genetic information of colored rice and is helpful for future molecular breeding. |
format | Online Article Text |
id | pubmed-7594711 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-75947112020-12-22 Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny Fan, Jing Zhu, Wen-You Li, Zhong-Fang Zhang, Xin-Fen Mitochondrial DNA B Resour Mitogenome Announcement Colored rice is gaining popularity due to its use in creative agriculture and the value of healthy consumption. However, the quality and yield characteristics of most rice varieties still need to be improved. Revealing the genetic background of colored rice is of great significance to promote crop improvement. Here, the completed chloroplast (cp) genome sequence of yellow colored Oryza sativa voucher HSAGSDYD1802 was sequenced and reported. It was a 134,502 bp circular DNA with a typical quadripartite structure, consisting of two reverse repeat regions (IR(a) and IR(b), 20,804 bp) separated by a large single-copy region (LSC, 80,547 bp) and a small single-copy region (SSC, 12,347 bp). The total GC content was 39%. The cp genome encoded 146 genes, containing 100 protein-coding genes, 8 rRNAs, and 38 tRNA genes. Phylogenetic analysis indicated that O. sativa voucher HSAGSDYD1802 was closely related to O. sativa L. TN1, RP Bio-226 and IR8. This study enriches the genetic information of colored rice and is helpful for future molecular breeding. Taylor & Francis 2020-10-27 /pmc/articles/PMC7594711/ /pubmed/33367045 http://dx.doi.org/10.1080/23802359.2020.1831992 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Fan, Jing Zhu, Wen-You Li, Zhong-Fang Zhang, Xin-Fen Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny |
title | Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny |
title_full | Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny |
title_fullStr | Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny |
title_full_unstemmed | Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny |
title_short | Chloroplast genome sequence of a yellow colored rice (Oryza sativa L.): insight into the genome structure and phylogeny |
title_sort | chloroplast genome sequence of a yellow colored rice (oryza sativa l.): insight into the genome structure and phylogeny |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594711/ https://www.ncbi.nlm.nih.gov/pubmed/33367045 http://dx.doi.org/10.1080/23802359.2020.1831992 |
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