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The complete chloroplast genome of Fraxinus malacophylla (Oleaceae, Oleoideae)
Fraxinus malacophylla is one of the commonly used ecological restoration tree species in rocky desertification areas. It has high medicinal and timber value. And has high marketization prospects. The complete chloroplast genome sequence of F. malacophylla was generated by de novo assembly using whol...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594738/ https://www.ncbi.nlm.nih.gov/pubmed/33367021 http://dx.doi.org/10.1080/23802359.2020.1827999 |
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author | Duan, Hua-Chao Zheng, Xin-Hua Li, Yan-Yan Li, Shi-Min Ye, Lan Jing, Hui-Zhu Dong, Qiong |
author_facet | Duan, Hua-Chao Zheng, Xin-Hua Li, Yan-Yan Li, Shi-Min Ye, Lan Jing, Hui-Zhu Dong, Qiong |
author_sort | Duan, Hua-Chao |
collection | PubMed |
description | Fraxinus malacophylla is one of the commonly used ecological restoration tree species in rocky desertification areas. It has high medicinal and timber value. And has high marketization prospects. The complete chloroplast genome sequence of F. malacophylla was generated by de novo assembly using whole-genome next generation sequencing. The complete chloroplast genome of F. malacophylla was 155621 bp in total sequence length and divided into four distinct regions: large single copy region (86404 bp), small single copy region (17821 bp), and a pair of inverted repeat regions (25698 bp). The F. malacophylla chloroplast genome annotation predicted a total of 131 genes, consisting of 35 tRNA genes, 8 rRNA genes, and 88 protein-coding genes. Phylogenetic analysis with the reported chloroplast genomes revealed that F. malacophylla has most closely related to F. excelsior. |
format | Online Article Text |
id | pubmed-7594738 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-75947382020-12-22 The complete chloroplast genome of Fraxinus malacophylla (Oleaceae, Oleoideae) Duan, Hua-Chao Zheng, Xin-Hua Li, Yan-Yan Li, Shi-Min Ye, Lan Jing, Hui-Zhu Dong, Qiong Mitochondrial DNA B Resour Mitogenome Announcement Fraxinus malacophylla is one of the commonly used ecological restoration tree species in rocky desertification areas. It has high medicinal and timber value. And has high marketization prospects. The complete chloroplast genome sequence of F. malacophylla was generated by de novo assembly using whole-genome next generation sequencing. The complete chloroplast genome of F. malacophylla was 155621 bp in total sequence length and divided into four distinct regions: large single copy region (86404 bp), small single copy region (17821 bp), and a pair of inverted repeat regions (25698 bp). The F. malacophylla chloroplast genome annotation predicted a total of 131 genes, consisting of 35 tRNA genes, 8 rRNA genes, and 88 protein-coding genes. Phylogenetic analysis with the reported chloroplast genomes revealed that F. malacophylla has most closely related to F. excelsior. Taylor & Francis 2020-10-21 /pmc/articles/PMC7594738/ /pubmed/33367021 http://dx.doi.org/10.1080/23802359.2020.1827999 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Duan, Hua-Chao Zheng, Xin-Hua Li, Yan-Yan Li, Shi-Min Ye, Lan Jing, Hui-Zhu Dong, Qiong The complete chloroplast genome of Fraxinus malacophylla (Oleaceae, Oleoideae) |
title | The complete chloroplast genome of Fraxinus malacophylla (Oleaceae, Oleoideae) |
title_full | The complete chloroplast genome of Fraxinus malacophylla (Oleaceae, Oleoideae) |
title_fullStr | The complete chloroplast genome of Fraxinus malacophylla (Oleaceae, Oleoideae) |
title_full_unstemmed | The complete chloroplast genome of Fraxinus malacophylla (Oleaceae, Oleoideae) |
title_short | The complete chloroplast genome of Fraxinus malacophylla (Oleaceae, Oleoideae) |
title_sort | complete chloroplast genome of fraxinus malacophylla (oleaceae, oleoideae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594738/ https://www.ncbi.nlm.nih.gov/pubmed/33367021 http://dx.doi.org/10.1080/23802359.2020.1827999 |
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