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The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae)
Hydrangea davidii, a perennial shrub of Hydrangeaceae, is an ornamental plant endemic to China. Here, we report the complete chloroplast genome of H. davidii. The complete chloroplast genome is totally 158,054 bp in length with a typical quadripartite structure. It consists a pair of inverted region...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594765/ https://www.ncbi.nlm.nih.gov/pubmed/33367027 http://dx.doi.org/10.1080/23802359.2020.1828001 |
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author | He, Lie-Fen Qiang, Shao-Juan Zhang, Yong-Hong Li, Hong-Fei |
author_facet | He, Lie-Fen Qiang, Shao-Juan Zhang, Yong-Hong Li, Hong-Fei |
author_sort | He, Lie-Fen |
collection | PubMed |
description | Hydrangea davidii, a perennial shrub of Hydrangeaceae, is an ornamental plant endemic to China. Here, we report the complete chloroplast genome of H. davidii. The complete chloroplast genome is totally 158,054 bp in length with a typical quadripartite structure. It consists a pair of inverted regions (IRs) of 26,140 bp, which were separated by a large single copy (LSC) region of 87,008 bp and a small single copy (SSC) region of 18,766 bp, respectively. The chloroplast genome encoded 131 genes, including 85 protein-coding genes, 8 rRNA genes and 38 tRNA genes. The GC content in the whole cp genome, LSC region, SSC region, and IR region are 37.8%, 36.0%, 31.7%, and 43.1%, respectively. In total, 49 SSRs were identified in the complete chloroplast genome. Phylogenetic analysis showed that H. davidii is closely related to Hydrangea platyarguta with a support rate of 100%. |
format | Online Article Text |
id | pubmed-7594765 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-75947652020-12-22 The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae) He, Lie-Fen Qiang, Shao-Juan Zhang, Yong-Hong Li, Hong-Fei Mitochondrial DNA B Resour Mitogenome Announcement Hydrangea davidii, a perennial shrub of Hydrangeaceae, is an ornamental plant endemic to China. Here, we report the complete chloroplast genome of H. davidii. The complete chloroplast genome is totally 158,054 bp in length with a typical quadripartite structure. It consists a pair of inverted regions (IRs) of 26,140 bp, which were separated by a large single copy (LSC) region of 87,008 bp and a small single copy (SSC) region of 18,766 bp, respectively. The chloroplast genome encoded 131 genes, including 85 protein-coding genes, 8 rRNA genes and 38 tRNA genes. The GC content in the whole cp genome, LSC region, SSC region, and IR region are 37.8%, 36.0%, 31.7%, and 43.1%, respectively. In total, 49 SSRs were identified in the complete chloroplast genome. Phylogenetic analysis showed that H. davidii is closely related to Hydrangea platyarguta with a support rate of 100%. Taylor & Francis 2020-10-21 /pmc/articles/PMC7594765/ /pubmed/33367027 http://dx.doi.org/10.1080/23802359.2020.1828001 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement He, Lie-Fen Qiang, Shao-Juan Zhang, Yong-Hong Li, Hong-Fei The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae) |
title | The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae) |
title_full | The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae) |
title_fullStr | The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae) |
title_full_unstemmed | The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae) |
title_short | The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae) |
title_sort | complete chloroplast genome of hydrangea davidii (hydrangeaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594765/ https://www.ncbi.nlm.nih.gov/pubmed/33367027 http://dx.doi.org/10.1080/23802359.2020.1828001 |
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