Cargando…

The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae)

Hydrangea davidii, a perennial shrub of Hydrangeaceae, is an ornamental plant endemic to China. Here, we report the complete chloroplast genome of H. davidii. The complete chloroplast genome is totally 158,054 bp in length with a typical quadripartite structure. It consists a pair of inverted region...

Descripción completa

Detalles Bibliográficos
Autores principales: He, Lie-Fen, Qiang, Shao-Juan, Zhang, Yong-Hong, Li, Hong-Fei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594765/
https://www.ncbi.nlm.nih.gov/pubmed/33367027
http://dx.doi.org/10.1080/23802359.2020.1828001
_version_ 1783601704610037760
author He, Lie-Fen
Qiang, Shao-Juan
Zhang, Yong-Hong
Li, Hong-Fei
author_facet He, Lie-Fen
Qiang, Shao-Juan
Zhang, Yong-Hong
Li, Hong-Fei
author_sort He, Lie-Fen
collection PubMed
description Hydrangea davidii, a perennial shrub of Hydrangeaceae, is an ornamental plant endemic to China. Here, we report the complete chloroplast genome of H. davidii. The complete chloroplast genome is totally 158,054 bp in length with a typical quadripartite structure. It consists a pair of inverted regions (IRs) of 26,140 bp, which were separated by a large single copy (LSC) region of 87,008 bp and a small single copy (SSC) region of 18,766 bp, respectively. The chloroplast genome encoded 131 genes, including 85 protein-coding genes, 8 rRNA genes and 38 tRNA genes. The GC content in the whole cp genome, LSC region, SSC region, and IR region are 37.8%, 36.0%, 31.7%, and 43.1%, respectively. In total, 49 SSRs were identified in the complete chloroplast genome. Phylogenetic analysis showed that H. davidii is closely related to Hydrangea platyarguta with a support rate of 100%.
format Online
Article
Text
id pubmed-7594765
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-75947652020-12-22 The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae) He, Lie-Fen Qiang, Shao-Juan Zhang, Yong-Hong Li, Hong-Fei Mitochondrial DNA B Resour Mitogenome Announcement Hydrangea davidii, a perennial shrub of Hydrangeaceae, is an ornamental plant endemic to China. Here, we report the complete chloroplast genome of H. davidii. The complete chloroplast genome is totally 158,054 bp in length with a typical quadripartite structure. It consists a pair of inverted regions (IRs) of 26,140 bp, which were separated by a large single copy (LSC) region of 87,008 bp and a small single copy (SSC) region of 18,766 bp, respectively. The chloroplast genome encoded 131 genes, including 85 protein-coding genes, 8 rRNA genes and 38 tRNA genes. The GC content in the whole cp genome, LSC region, SSC region, and IR region are 37.8%, 36.0%, 31.7%, and 43.1%, respectively. In total, 49 SSRs were identified in the complete chloroplast genome. Phylogenetic analysis showed that H. davidii is closely related to Hydrangea platyarguta with a support rate of 100%. Taylor & Francis 2020-10-21 /pmc/articles/PMC7594765/ /pubmed/33367027 http://dx.doi.org/10.1080/23802359.2020.1828001 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
He, Lie-Fen
Qiang, Shao-Juan
Zhang, Yong-Hong
Li, Hong-Fei
The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae)
title The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae)
title_full The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae)
title_fullStr The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae)
title_full_unstemmed The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae)
title_short The complete chloroplast genome of Hydrangea davidii (Hydrangeaceae)
title_sort complete chloroplast genome of hydrangea davidii (hydrangeaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594765/
https://www.ncbi.nlm.nih.gov/pubmed/33367027
http://dx.doi.org/10.1080/23802359.2020.1828001
work_keys_str_mv AT heliefen thecompletechloroplastgenomeofhydrangeadavidiihydrangeaceae
AT qiangshaojuan thecompletechloroplastgenomeofhydrangeadavidiihydrangeaceae
AT zhangyonghong thecompletechloroplastgenomeofhydrangeadavidiihydrangeaceae
AT lihongfei thecompletechloroplastgenomeofhydrangeadavidiihydrangeaceae
AT heliefen completechloroplastgenomeofhydrangeadavidiihydrangeaceae
AT qiangshaojuan completechloroplastgenomeofhydrangeadavidiihydrangeaceae
AT zhangyonghong completechloroplastgenomeofhydrangeadavidiihydrangeaceae
AT lihongfei completechloroplastgenomeofhydrangeadavidiihydrangeaceae