Complete chloroplast genome of Prunus fruticosa and its implications for the phylogenetic position within Prunus sensulato (Rosaceae)

Prunus fruticosa is a wild species of Prunus distributed across the central Eurasia. Here, we reported the complete chloroplast (cp) genome of P. fruticosa (GenBank accession number: MT916286). The cp genome was 158,217 bp long, with a large single-copy region (LSC) of 86,322 bp and a small single-c...

Descripción completa

Detalles Bibliográficos
Autores principales: Yang, Yu-Xin, Tian, Mi-Hui, Liu, Xin-Hong, Li, Yue-ling, Sun, Zhong-Shuai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594838/
https://www.ncbi.nlm.nih.gov/pubmed/33367034
http://dx.doi.org/10.1080/23802359.2020.1831993
_version_ 1783601708594626560
author Yang, Yu-Xin
Tian, Mi-Hui
Liu, Xin-Hong
Li, Yue-ling
Sun, Zhong-Shuai
author_facet Yang, Yu-Xin
Tian, Mi-Hui
Liu, Xin-Hong
Li, Yue-ling
Sun, Zhong-Shuai
author_sort Yang, Yu-Xin
collection PubMed
description Prunus fruticosa is a wild species of Prunus distributed across the central Eurasia. Here, we reported the complete chloroplast (cp) genome of P. fruticosa (GenBank accession number: MT916286). The cp genome was 158,217 bp long, with a large single-copy region (LSC) of 86,322 bp and a small single-copy region (SSC) of 19,153 bp separated by a pair of inverted repeats (IRs) of 26,371 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. fruticosa is closely related with Prunus avium.
format Online
Article
Text
id pubmed-7594838
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-75948382020-12-22 Complete chloroplast genome of Prunus fruticosa and its implications for the phylogenetic position within Prunus sensulato (Rosaceae) Yang, Yu-Xin Tian, Mi-Hui Liu, Xin-Hong Li, Yue-ling Sun, Zhong-Shuai Mitochondrial DNA B Resour Mitogenome Announcement Prunus fruticosa is a wild species of Prunus distributed across the central Eurasia. Here, we reported the complete chloroplast (cp) genome of P. fruticosa (GenBank accession number: MT916286). The cp genome was 158,217 bp long, with a large single-copy region (LSC) of 86,322 bp and a small single-copy region (SSC) of 19,153 bp separated by a pair of inverted repeats (IRs) of 26,371 bp. It encodes 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 ribosomal RNA genes. We also reconstructed the phylogeny of Prunus sensu lato using maximum likelihood (ML) method, including our data and previously reported cp genomes of related taxa. The phylogenetic analysis indicated that P. fruticosa is closely related with Prunus avium. Taylor & Francis 2020-10-27 /pmc/articles/PMC7594838/ /pubmed/33367034 http://dx.doi.org/10.1080/23802359.2020.1831993 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yang, Yu-Xin
Tian, Mi-Hui
Liu, Xin-Hong
Li, Yue-ling
Sun, Zhong-Shuai
Complete chloroplast genome of Prunus fruticosa and its implications for the phylogenetic position within Prunus sensulato (Rosaceae)
title Complete chloroplast genome of Prunus fruticosa and its implications for the phylogenetic position within Prunus sensulato (Rosaceae)
title_full Complete chloroplast genome of Prunus fruticosa and its implications for the phylogenetic position within Prunus sensulato (Rosaceae)
title_fullStr Complete chloroplast genome of Prunus fruticosa and its implications for the phylogenetic position within Prunus sensulato (Rosaceae)
title_full_unstemmed Complete chloroplast genome of Prunus fruticosa and its implications for the phylogenetic position within Prunus sensulato (Rosaceae)
title_short Complete chloroplast genome of Prunus fruticosa and its implications for the phylogenetic position within Prunus sensulato (Rosaceae)
title_sort complete chloroplast genome of prunus fruticosa and its implications for the phylogenetic position within prunus sensulato (rosaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594838/
https://www.ncbi.nlm.nih.gov/pubmed/33367034
http://dx.doi.org/10.1080/23802359.2020.1831993
work_keys_str_mv AT yangyuxin completechloroplastgenomeofprunusfruticosaanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae
AT tianmihui completechloroplastgenomeofprunusfruticosaanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae
AT liuxinhong completechloroplastgenomeofprunusfruticosaanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae
AT liyueling completechloroplastgenomeofprunusfruticosaanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae
AT sunzhongshuai completechloroplastgenomeofprunusfruticosaanditsimplicationsforthephylogeneticpositionwithinprunussensulatorosaceae

Ejemplares similares