The complete chloroplast genome of Zanthoxylum acanthopodium DC. (Rutaceae) and its phylogenetic analysis

We sequenced the complete chloroplast genome of Zanthoxylum acanthopodium via high-throughput sequencing technology, and analyzed its structural characteristics and phylogenetic relationships. The chloroplast exhibits a genome length of 158,473 bp, including a pair of inverted repeat regions (IRa an...

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Detalles Bibliográficos
Autores principales: Li, Hai-Ling, Zhou, Nong, Guo, Dong-Qin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2020
Materias:
Rapid Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594859/
https://www.ncbi.nlm.nih.gov/pubmed/33367039
http://dx.doi.org/10.1080/23802359.2020.1823268
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author Li, Hai-Ling
Zhou, Nong
Guo, Dong-Qin
author_facet Li, Hai-Ling
Zhou, Nong
Guo, Dong-Qin
author_sort Li, Hai-Ling
collection PubMed
description We sequenced the complete chloroplast genome of Zanthoxylum acanthopodium via high-throughput sequencing technology, and analyzed its structural characteristics and phylogenetic relationships. The chloroplast exhibits a genome length of 158,473 bp, including a pair of inverted repeat regions (IRa and IRb) of 27,369 bp, a small single-copy (SSC) region of 17,629 bp and a large single-copy (LSC) region of 85,570 bp. The annotation analysis identified 112 genes, containing 78 protein-coding genes, 30 tRNA genes and 4 rRNA genes. The phylogenetic analysis showed that Z. acanthopodium was closely related to Z. piperitum and Z. tragodes.
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spelling pubmed-75948592020-12-22 The complete chloroplast genome of Zanthoxylum acanthopodium DC. (Rutaceae) and its phylogenetic analysis Li, Hai-Ling Zhou, Nong Guo, Dong-Qin Mitochondrial DNA B Resour Rapid Communication We sequenced the complete chloroplast genome of Zanthoxylum acanthopodium via high-throughput sequencing technology, and analyzed its structural characteristics and phylogenetic relationships. The chloroplast exhibits a genome length of 158,473 bp, including a pair of inverted repeat regions (IRa and IRb) of 27,369 bp, a small single-copy (SSC) region of 17,629 bp and a large single-copy (LSC) region of 85,570 bp. The annotation analysis identified 112 genes, containing 78 protein-coding genes, 30 tRNA genes and 4 rRNA genes. The phylogenetic analysis showed that Z. acanthopodium was closely related to Z. piperitum and Z. tragodes. Taylor & Francis 2020-10-27 /pmc/articles/PMC7594859/ /pubmed/33367039 http://dx.doi.org/10.1080/23802359.2020.1823268 Text en © 2020 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Rapid Communication
Li, Hai-Ling
Zhou, Nong
Guo, Dong-Qin
The complete chloroplast genome of Zanthoxylum acanthopodium DC. (Rutaceae) and its phylogenetic analysis
title The complete chloroplast genome of Zanthoxylum acanthopodium DC. (Rutaceae) and its phylogenetic analysis
title_full The complete chloroplast genome of Zanthoxylum acanthopodium DC. (Rutaceae) and its phylogenetic analysis
title_fullStr The complete chloroplast genome of Zanthoxylum acanthopodium DC. (Rutaceae) and its phylogenetic analysis
title_full_unstemmed The complete chloroplast genome of Zanthoxylum acanthopodium DC. (Rutaceae) and its phylogenetic analysis
title_short The complete chloroplast genome of Zanthoxylum acanthopodium DC. (Rutaceae) and its phylogenetic analysis
title_sort complete chloroplast genome of zanthoxylum acanthopodium dc. (rutaceae) and its phylogenetic analysis
topic Rapid Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7594859/
https://www.ncbi.nlm.nih.gov/pubmed/33367039
http://dx.doi.org/10.1080/23802359.2020.1823268
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