Cargando…

Characterizing the Complexity of Weighted Networks via Graph Embedding and Point Pattern Analysis

We propose a new metric to characterize the complexity of weighted complex networks. Weighted complex networks represent a highly organized interactive process, for example, co-varying returns between stocks (financial networks) and coordination between brain regions (brain connectivity networks). A...

Descripción completa

Detalles Bibliográficos
Autores principales: Chen, Shuo, Zhang, Zhen, Mo, Chen, Wu, Qiong, Kochunov, Peter, Hong, L. Elliot
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7597178/
https://www.ncbi.nlm.nih.gov/pubmed/33286694
http://dx.doi.org/10.3390/e22090925
_version_ 1783602283539333120
author Chen, Shuo
Zhang, Zhen
Mo, Chen
Wu, Qiong
Kochunov, Peter
Hong, L. Elliot
author_facet Chen, Shuo
Zhang, Zhen
Mo, Chen
Wu, Qiong
Kochunov, Peter
Hong, L. Elliot
author_sort Chen, Shuo
collection PubMed
description We propose a new metric to characterize the complexity of weighted complex networks. Weighted complex networks represent a highly organized interactive process, for example, co-varying returns between stocks (financial networks) and coordination between brain regions (brain connectivity networks). Although network entropy methods have been developed for binary networks, the measurement of non-randomness and complexity for large weighted networks remains challenging. We develop a new analytical framework to measure the complexity of a weighted network via graph embedding and point pattern analysis techniques in order to address this unmet need. We first perform graph embedding to project all nodes of the weighted adjacency matrix to a low dimensional vector space. Next, we analyze the point distribution pattern in the projected space, and measure its deviation from the complete spatial randomness. We evaluate our method via extensive simulation studies and find that our method can sensitively detect the difference of complexity and is robust to noise. Last, we apply the approach to a functional magnetic resonance imaging study and compare the complexity metrics of functional brain connectivity networks from 124 patients with schizophrenia and 103 healthy controls. The results show that the brain circuitry is more organized in healthy controls than schizophrenic patients for male subjects while the difference is minimal in female subjects. These findings are well aligned with the established sex difference in schizophrenia.
format Online
Article
Text
id pubmed-7597178
institution National Center for Biotechnology Information
language English
publishDate 2020
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-75971782020-11-09 Characterizing the Complexity of Weighted Networks via Graph Embedding and Point Pattern Analysis Chen, Shuo Zhang, Zhen Mo, Chen Wu, Qiong Kochunov, Peter Hong, L. Elliot Entropy (Basel) Article We propose a new metric to characterize the complexity of weighted complex networks. Weighted complex networks represent a highly organized interactive process, for example, co-varying returns between stocks (financial networks) and coordination between brain regions (brain connectivity networks). Although network entropy methods have been developed for binary networks, the measurement of non-randomness and complexity for large weighted networks remains challenging. We develop a new analytical framework to measure the complexity of a weighted network via graph embedding and point pattern analysis techniques in order to address this unmet need. We first perform graph embedding to project all nodes of the weighted adjacency matrix to a low dimensional vector space. Next, we analyze the point distribution pattern in the projected space, and measure its deviation from the complete spatial randomness. We evaluate our method via extensive simulation studies and find that our method can sensitively detect the difference of complexity and is robust to noise. Last, we apply the approach to a functional magnetic resonance imaging study and compare the complexity metrics of functional brain connectivity networks from 124 patients with schizophrenia and 103 healthy controls. The results show that the brain circuitry is more organized in healthy controls than schizophrenic patients for male subjects while the difference is minimal in female subjects. These findings are well aligned with the established sex difference in schizophrenia. MDPI 2020-08-23 /pmc/articles/PMC7597178/ /pubmed/33286694 http://dx.doi.org/10.3390/e22090925 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Chen, Shuo
Zhang, Zhen
Mo, Chen
Wu, Qiong
Kochunov, Peter
Hong, L. Elliot
Characterizing the Complexity of Weighted Networks via Graph Embedding and Point Pattern Analysis
title Characterizing the Complexity of Weighted Networks via Graph Embedding and Point Pattern Analysis
title_full Characterizing the Complexity of Weighted Networks via Graph Embedding and Point Pattern Analysis
title_fullStr Characterizing the Complexity of Weighted Networks via Graph Embedding and Point Pattern Analysis
title_full_unstemmed Characterizing the Complexity of Weighted Networks via Graph Embedding and Point Pattern Analysis
title_short Characterizing the Complexity of Weighted Networks via Graph Embedding and Point Pattern Analysis
title_sort characterizing the complexity of weighted networks via graph embedding and point pattern analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7597178/
https://www.ncbi.nlm.nih.gov/pubmed/33286694
http://dx.doi.org/10.3390/e22090925
work_keys_str_mv AT chenshuo characterizingthecomplexityofweightednetworksviagraphembeddingandpointpatternanalysis
AT zhangzhen characterizingthecomplexityofweightednetworksviagraphembeddingandpointpatternanalysis
AT mochen characterizingthecomplexityofweightednetworksviagraphembeddingandpointpatternanalysis
AT wuqiong characterizingthecomplexityofweightednetworksviagraphembeddingandpointpatternanalysis
AT kochunovpeter characterizingthecomplexityofweightednetworksviagraphembeddingandpointpatternanalysis
AT honglelliot characterizingthecomplexityofweightednetworksviagraphembeddingandpointpatternanalysis