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OpBox: Open Source Tools for Simultaneous EEG and EMG Acquisition from Multiple Subjects

In vivo electrophysiology experiments require the collection of data from multiple subjects, often for extended periods. Studying multiple subjects for extended periods can be made more efficient through simultaneous recordings, but scaling up recordings to accommodate larger numbers of subjects sim...

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Autores principales: Kimchi, Eyal Y., Coughlin, Brian F., Shanahan, Benjamin E., Piantoni, Giovanni, Pezaris, John, Cash, Sydney S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Society for Neuroscience 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7598913/
https://www.ncbi.nlm.nih.gov/pubmed/33060183
http://dx.doi.org/10.1523/ENEURO.0212-20.2020
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author Kimchi, Eyal Y.
Coughlin, Brian F.
Shanahan, Benjamin E.
Piantoni, Giovanni
Pezaris, John
Cash, Sydney S.
author_facet Kimchi, Eyal Y.
Coughlin, Brian F.
Shanahan, Benjamin E.
Piantoni, Giovanni
Pezaris, John
Cash, Sydney S.
author_sort Kimchi, Eyal Y.
collection PubMed
description In vivo electrophysiology experiments require the collection of data from multiple subjects, often for extended periods. Studying multiple subjects for extended periods can be made more efficient through simultaneous recordings, but scaling up recordings to accommodate larger numbers of subjects simultaneously requires coordination and consideration of costs and flexibility. To facilitate this process, we have developed OpBox, an open source set of tools to acquire electroencephalography (EEG) and electromyography (EMG) flexibly from multiple rodent subjects simultaneously. OpBox combines open source hardware and software with off-the-shelf components to create a system that costs less than commercial solutions ($500 per subject), and can be easily deployed for multiple subjects. Coded in MATLAB, OpBox scripts can simultaneously and flexibly collect and display multiple analog and digital data streams, for instance real-time EEG and EMG, event triggers from a behavioral system, and rotary encoder data. OpBox also calculates and displays real-time spectral representations and event-related potentials (ERPs). To verify the performance of our system, we compare our amplifiers with two other commercial amplifiers, a Grass P55 AC preamplifier and an Intan RHD2000-series amplifier. The OpBox amplifier performs comparably to commercial amplifiers for signal-to-noise ratios (SNRs), noise floors, and common mode rejection. We also demonstrate that our acquisition system can reliably record multichannel data from multiple subjects, and has been successfully tested with 12 subjects running simultaneously on a single standard desktop computer. Together, OpBox increases the flexibility and lowers the cost for simultaneous acquisition of electrophysiology data from multiple subjects.
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spelling pubmed-75989132020-11-02 OpBox: Open Source Tools for Simultaneous EEG and EMG Acquisition from Multiple Subjects Kimchi, Eyal Y. Coughlin, Brian F. Shanahan, Benjamin E. Piantoni, Giovanni Pezaris, John Cash, Sydney S. eNeuro Opbox: Open Source Tools and Methods In vivo electrophysiology experiments require the collection of data from multiple subjects, often for extended periods. Studying multiple subjects for extended periods can be made more efficient through simultaneous recordings, but scaling up recordings to accommodate larger numbers of subjects simultaneously requires coordination and consideration of costs and flexibility. To facilitate this process, we have developed OpBox, an open source set of tools to acquire electroencephalography (EEG) and electromyography (EMG) flexibly from multiple rodent subjects simultaneously. OpBox combines open source hardware and software with off-the-shelf components to create a system that costs less than commercial solutions ($500 per subject), and can be easily deployed for multiple subjects. Coded in MATLAB, OpBox scripts can simultaneously and flexibly collect and display multiple analog and digital data streams, for instance real-time EEG and EMG, event triggers from a behavioral system, and rotary encoder data. OpBox also calculates and displays real-time spectral representations and event-related potentials (ERPs). To verify the performance of our system, we compare our amplifiers with two other commercial amplifiers, a Grass P55 AC preamplifier and an Intan RHD2000-series amplifier. The OpBox amplifier performs comparably to commercial amplifiers for signal-to-noise ratios (SNRs), noise floors, and common mode rejection. We also demonstrate that our acquisition system can reliably record multichannel data from multiple subjects, and has been successfully tested with 12 subjects running simultaneously on a single standard desktop computer. Together, OpBox increases the flexibility and lowers the cost for simultaneous acquisition of electrophysiology data from multiple subjects. Society for Neuroscience 2020-10-27 /pmc/articles/PMC7598913/ /pubmed/33060183 http://dx.doi.org/10.1523/ENEURO.0212-20.2020 Text en Copyright © 2020 Kimchi et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed.
spellingShingle Opbox: Open Source Tools and Methods
Kimchi, Eyal Y.
Coughlin, Brian F.
Shanahan, Benjamin E.
Piantoni, Giovanni
Pezaris, John
Cash, Sydney S.
OpBox: Open Source Tools for Simultaneous EEG and EMG Acquisition from Multiple Subjects
title OpBox: Open Source Tools for Simultaneous EEG and EMG Acquisition from Multiple Subjects
title_full OpBox: Open Source Tools for Simultaneous EEG and EMG Acquisition from Multiple Subjects
title_fullStr OpBox: Open Source Tools for Simultaneous EEG and EMG Acquisition from Multiple Subjects
title_full_unstemmed OpBox: Open Source Tools for Simultaneous EEG and EMG Acquisition from Multiple Subjects
title_short OpBox: Open Source Tools for Simultaneous EEG and EMG Acquisition from Multiple Subjects
title_sort opbox: open source tools for simultaneous eeg and emg acquisition from multiple subjects
topic Opbox: Open Source Tools and Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7598913/
https://www.ncbi.nlm.nih.gov/pubmed/33060183
http://dx.doi.org/10.1523/ENEURO.0212-20.2020
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