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Towards retrieving the Promethean treasure: a first molecular assessment of the freshwater fish diversity of Georgia

In this study, we provide a first estimation of the molecular diversity of the freshwater fishes of Georgia. In addition to field collections, we integrated DNA barcode data obtained from recent works and public databases (BOLD and NCBI GenBank). Currently, the DNA barcode reference library for fres...

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Autores principales: Epitashvili, Giorgi, Geiger, Matthias, Astrin, Jonas J, Herder, Fabian, Japoshvili, Bella, Mumladze, Levan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7599205/
https://www.ncbi.nlm.nih.gov/pubmed/33177949
http://dx.doi.org/10.3897/BDJ.8.e57862
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author Epitashvili, Giorgi
Geiger, Matthias
Astrin, Jonas J
Herder, Fabian
Japoshvili, Bella
Mumladze, Levan
author_facet Epitashvili, Giorgi
Geiger, Matthias
Astrin, Jonas J
Herder, Fabian
Japoshvili, Bella
Mumladze, Levan
author_sort Epitashvili, Giorgi
collection PubMed
description In this study, we provide a first estimation of the molecular diversity of the freshwater fishes of Georgia. In addition to field collections, we integrated DNA barcode data obtained from recent works and public databases (BOLD and NCBI GenBank). Currently, the DNA barcode reference library for freshwater fishes of Georgia comprises 352 DNA barcodes for 50 species, 36 genera and 15 families (52% of total Georgian freshwater fish diversity), from which 162 DNA barcodes belonging to 41 species were newly generated as part of this study. A total of 22 species are reported from the Caspian Sea basin and 31 from the Black Sea basin. Amongst the studied taxa, seven species were found with large interspecific divergences (> 2%) while 11 species were found to share DNA barcodes within our dataset. In the course of the study, we found the first evidence of the existence of Gymnocephalus cernua (Linnaeus, 1758) and also confirm the second occurrence of invasive Rhinogobius lindbergi (Berg, 1933) in Georgia. Based on the evaluation of currently-available barcode data for Georgian fishes, we highlighted major gaps and research needs to further progress DNA-based biodiversity studies in Georgia. Though this study lays a solid base for DNA, based biodiversity assessment and monitoring approaches, further efforts within the recently started CaBOL (Caucasus Barcode Of Life) project are needed to obtain reference data for the species still lacking DNA barcodes.
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spelling pubmed-75992052020-11-10 Towards retrieving the Promethean treasure: a first molecular assessment of the freshwater fish diversity of Georgia Epitashvili, Giorgi Geiger, Matthias Astrin, Jonas J Herder, Fabian Japoshvili, Bella Mumladze, Levan Biodivers Data J Research Article In this study, we provide a first estimation of the molecular diversity of the freshwater fishes of Georgia. In addition to field collections, we integrated DNA barcode data obtained from recent works and public databases (BOLD and NCBI GenBank). Currently, the DNA barcode reference library for freshwater fishes of Georgia comprises 352 DNA barcodes for 50 species, 36 genera and 15 families (52% of total Georgian freshwater fish diversity), from which 162 DNA barcodes belonging to 41 species were newly generated as part of this study. A total of 22 species are reported from the Caspian Sea basin and 31 from the Black Sea basin. Amongst the studied taxa, seven species were found with large interspecific divergences (> 2%) while 11 species were found to share DNA barcodes within our dataset. In the course of the study, we found the first evidence of the existence of Gymnocephalus cernua (Linnaeus, 1758) and also confirm the second occurrence of invasive Rhinogobius lindbergi (Berg, 1933) in Georgia. Based on the evaluation of currently-available barcode data for Georgian fishes, we highlighted major gaps and research needs to further progress DNA-based biodiversity studies in Georgia. Though this study lays a solid base for DNA, based biodiversity assessment and monitoring approaches, further efforts within the recently started CaBOL (Caucasus Barcode Of Life) project are needed to obtain reference data for the species still lacking DNA barcodes. Pensoft Publishers 2020-10-23 /pmc/articles/PMC7599205/ /pubmed/33177949 http://dx.doi.org/10.3897/BDJ.8.e57862 Text en Giorgi Epitashvili, Matthias Geiger, Jonas J Astrin, Fabian Herder, Bella Japoshvili, Levan Mumladze http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Epitashvili, Giorgi
Geiger, Matthias
Astrin, Jonas J
Herder, Fabian
Japoshvili, Bella
Mumladze, Levan
Towards retrieving the Promethean treasure: a first molecular assessment of the freshwater fish diversity of Georgia
title Towards retrieving the Promethean treasure: a first molecular assessment of the freshwater fish diversity of Georgia
title_full Towards retrieving the Promethean treasure: a first molecular assessment of the freshwater fish diversity of Georgia
title_fullStr Towards retrieving the Promethean treasure: a first molecular assessment of the freshwater fish diversity of Georgia
title_full_unstemmed Towards retrieving the Promethean treasure: a first molecular assessment of the freshwater fish diversity of Georgia
title_short Towards retrieving the Promethean treasure: a first molecular assessment of the freshwater fish diversity of Georgia
title_sort towards retrieving the promethean treasure: a first molecular assessment of the freshwater fish diversity of georgia
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7599205/
https://www.ncbi.nlm.nih.gov/pubmed/33177949
http://dx.doi.org/10.3897/BDJ.8.e57862
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