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Deep Learning-Based Classification of Inherited Retinal Diseases Using Fundus Autofluorescence

Background. In recent years, deep learning has been increasingly applied to a vast array of ophthalmological diseases. Inherited retinal diseases (IRD) are rare genetic conditions with a distinctive phenotype on fundus autofluorescence imaging (FAF). Our purpose was to automatically classify differe...

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Autores principales: Miere, Alexandra, Le Meur, Thomas, Bitton, Karen, Pallone, Carlotta, Semoun, Oudy, Capuano, Vittorio, Colantuono, Donato, Taibouni, Kawther, Chenoune, Yasmina, Astroz, Polina, Berlemont, Sylvain, Petit, Eric, Souied, Eric
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7602508/
https://www.ncbi.nlm.nih.gov/pubmed/33066661
http://dx.doi.org/10.3390/jcm9103303
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author Miere, Alexandra
Le Meur, Thomas
Bitton, Karen
Pallone, Carlotta
Semoun, Oudy
Capuano, Vittorio
Colantuono, Donato
Taibouni, Kawther
Chenoune, Yasmina
Astroz, Polina
Berlemont, Sylvain
Petit, Eric
Souied, Eric
author_facet Miere, Alexandra
Le Meur, Thomas
Bitton, Karen
Pallone, Carlotta
Semoun, Oudy
Capuano, Vittorio
Colantuono, Donato
Taibouni, Kawther
Chenoune, Yasmina
Astroz, Polina
Berlemont, Sylvain
Petit, Eric
Souied, Eric
author_sort Miere, Alexandra
collection PubMed
description Background. In recent years, deep learning has been increasingly applied to a vast array of ophthalmological diseases. Inherited retinal diseases (IRD) are rare genetic conditions with a distinctive phenotype on fundus autofluorescence imaging (FAF). Our purpose was to automatically classify different IRDs by means of FAF images using a deep learning algorithm. Methods. In this study, FAF images of patients with retinitis pigmentosa (RP), Best disease (BD), Stargardt disease (STGD), as well as a healthy comparable group were used to train a multilayer deep convolutional neural network (CNN) to differentiate FAF images between each type of IRD and normal FAF. The CNN was trained and validated with 389 FAF images. Established augmentation techniques were used. An Adam optimizer was used for training. For subsequent testing, the built classifiers were then tested with 94 untrained FAF images. Results. For the inherited retinal disease classifiers, global accuracy was 0.95. The precision-recall area under the curve (PRC-AUC) averaged 0.988 for BD, 0.999 for RP, 0.996 for STGD, and 0.989 for healthy controls. Conclusions. This study describes the use of a deep learning-based algorithm to automatically detect and classify inherited retinal disease in FAF. Hereby, the created classifiers showed excellent results. With further developments, this model may be a diagnostic tool and may give relevant information for future therapeutic approaches.
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spelling pubmed-76025082020-11-01 Deep Learning-Based Classification of Inherited Retinal Diseases Using Fundus Autofluorescence Miere, Alexandra Le Meur, Thomas Bitton, Karen Pallone, Carlotta Semoun, Oudy Capuano, Vittorio Colantuono, Donato Taibouni, Kawther Chenoune, Yasmina Astroz, Polina Berlemont, Sylvain Petit, Eric Souied, Eric J Clin Med Article Background. In recent years, deep learning has been increasingly applied to a vast array of ophthalmological diseases. Inherited retinal diseases (IRD) are rare genetic conditions with a distinctive phenotype on fundus autofluorescence imaging (FAF). Our purpose was to automatically classify different IRDs by means of FAF images using a deep learning algorithm. Methods. In this study, FAF images of patients with retinitis pigmentosa (RP), Best disease (BD), Stargardt disease (STGD), as well as a healthy comparable group were used to train a multilayer deep convolutional neural network (CNN) to differentiate FAF images between each type of IRD and normal FAF. The CNN was trained and validated with 389 FAF images. Established augmentation techniques were used. An Adam optimizer was used for training. For subsequent testing, the built classifiers were then tested with 94 untrained FAF images. Results. For the inherited retinal disease classifiers, global accuracy was 0.95. The precision-recall area under the curve (PRC-AUC) averaged 0.988 for BD, 0.999 for RP, 0.996 for STGD, and 0.989 for healthy controls. Conclusions. This study describes the use of a deep learning-based algorithm to automatically detect and classify inherited retinal disease in FAF. Hereby, the created classifiers showed excellent results. With further developments, this model may be a diagnostic tool and may give relevant information for future therapeutic approaches. MDPI 2020-10-14 /pmc/articles/PMC7602508/ /pubmed/33066661 http://dx.doi.org/10.3390/jcm9103303 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Miere, Alexandra
Le Meur, Thomas
Bitton, Karen
Pallone, Carlotta
Semoun, Oudy
Capuano, Vittorio
Colantuono, Donato
Taibouni, Kawther
Chenoune, Yasmina
Astroz, Polina
Berlemont, Sylvain
Petit, Eric
Souied, Eric
Deep Learning-Based Classification of Inherited Retinal Diseases Using Fundus Autofluorescence
title Deep Learning-Based Classification of Inherited Retinal Diseases Using Fundus Autofluorescence
title_full Deep Learning-Based Classification of Inherited Retinal Diseases Using Fundus Autofluorescence
title_fullStr Deep Learning-Based Classification of Inherited Retinal Diseases Using Fundus Autofluorescence
title_full_unstemmed Deep Learning-Based Classification of Inherited Retinal Diseases Using Fundus Autofluorescence
title_short Deep Learning-Based Classification of Inherited Retinal Diseases Using Fundus Autofluorescence
title_sort deep learning-based classification of inherited retinal diseases using fundus autofluorescence
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7602508/
https://www.ncbi.nlm.nih.gov/pubmed/33066661
http://dx.doi.org/10.3390/jcm9103303
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