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Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data

The emergence of nanoinformatics as a key component of nanotechnology and nanosafety assessment for the prediction of engineered nanomaterials (NMs) properties, interactions, and hazards, and for grouping and read-across to reduce reliance on animal testing, has put the spotlight firmly on the need...

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Autores principales: Papadiamantis, Anastasios G., Klaessig, Frederick C., Exner, Thomas E., Hofer, Sabine, Hofstaetter, Norbert, Himly, Martin, Williams, Marc A., Doganis, Philip, Hoover, Mark D., Afantitis, Antreas, Melagraki, Georgia, Nolan, Tracy S., Rumble, John, Maier, Dieter, Lynch, Iseult
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7602672/
https://www.ncbi.nlm.nih.gov/pubmed/33076428
http://dx.doi.org/10.3390/nano10102033
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author Papadiamantis, Anastasios G.
Klaessig, Frederick C.
Exner, Thomas E.
Hofer, Sabine
Hofstaetter, Norbert
Himly, Martin
Williams, Marc A.
Doganis, Philip
Hoover, Mark D.
Afantitis, Antreas
Melagraki, Georgia
Nolan, Tracy S.
Rumble, John
Maier, Dieter
Lynch, Iseult
author_facet Papadiamantis, Anastasios G.
Klaessig, Frederick C.
Exner, Thomas E.
Hofer, Sabine
Hofstaetter, Norbert
Himly, Martin
Williams, Marc A.
Doganis, Philip
Hoover, Mark D.
Afantitis, Antreas
Melagraki, Georgia
Nolan, Tracy S.
Rumble, John
Maier, Dieter
Lynch, Iseult
author_sort Papadiamantis, Anastasios G.
collection PubMed
description The emergence of nanoinformatics as a key component of nanotechnology and nanosafety assessment for the prediction of engineered nanomaterials (NMs) properties, interactions, and hazards, and for grouping and read-across to reduce reliance on animal testing, has put the spotlight firmly on the need for access to high-quality, curated datasets. To date, the focus has been around what constitutes data quality and completeness, on the development of minimum reporting standards, and on the FAIR (findable, accessible, interoperable, and reusable) data principles. However, moving from the theoretical realm to practical implementation requires human intervention, which will be facilitated by the definition of clear roles and responsibilities across the complete data lifecycle and a deeper appreciation of what metadata is, and how to capture and index it. Here, we demonstrate, using specific worked case studies, how to organise the nano-community efforts to define metadata schemas, by organising the data management cycle as a joint effort of all players (data creators, analysts, curators, managers, and customers) supervised by the newly defined role of data shepherd. We propose that once researchers understand their tasks and responsibilities, they will naturally apply the available tools. Two case studies are presented (modelling of particle agglomeration for dose metrics, and consensus for NM dissolution), along with a survey of the currently implemented metadata schema in existing nanosafety databases. We conclude by offering recommendations on the steps forward and the needed workflows for metadata capture to ensure FAIR nanosafety data.
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spelling pubmed-76026722020-11-01 Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data Papadiamantis, Anastasios G. Klaessig, Frederick C. Exner, Thomas E. Hofer, Sabine Hofstaetter, Norbert Himly, Martin Williams, Marc A. Doganis, Philip Hoover, Mark D. Afantitis, Antreas Melagraki, Georgia Nolan, Tracy S. Rumble, John Maier, Dieter Lynch, Iseult Nanomaterials (Basel) Article The emergence of nanoinformatics as a key component of nanotechnology and nanosafety assessment for the prediction of engineered nanomaterials (NMs) properties, interactions, and hazards, and for grouping and read-across to reduce reliance on animal testing, has put the spotlight firmly on the need for access to high-quality, curated datasets. To date, the focus has been around what constitutes data quality and completeness, on the development of minimum reporting standards, and on the FAIR (findable, accessible, interoperable, and reusable) data principles. However, moving from the theoretical realm to practical implementation requires human intervention, which will be facilitated by the definition of clear roles and responsibilities across the complete data lifecycle and a deeper appreciation of what metadata is, and how to capture and index it. Here, we demonstrate, using specific worked case studies, how to organise the nano-community efforts to define metadata schemas, by organising the data management cycle as a joint effort of all players (data creators, analysts, curators, managers, and customers) supervised by the newly defined role of data shepherd. We propose that once researchers understand their tasks and responsibilities, they will naturally apply the available tools. Two case studies are presented (modelling of particle agglomeration for dose metrics, and consensus for NM dissolution), along with a survey of the currently implemented metadata schema in existing nanosafety databases. We conclude by offering recommendations on the steps forward and the needed workflows for metadata capture to ensure FAIR nanosafety data. MDPI 2020-10-15 /pmc/articles/PMC7602672/ /pubmed/33076428 http://dx.doi.org/10.3390/nano10102033 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Papadiamantis, Anastasios G.
Klaessig, Frederick C.
Exner, Thomas E.
Hofer, Sabine
Hofstaetter, Norbert
Himly, Martin
Williams, Marc A.
Doganis, Philip
Hoover, Mark D.
Afantitis, Antreas
Melagraki, Georgia
Nolan, Tracy S.
Rumble, John
Maier, Dieter
Lynch, Iseult
Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data
title Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data
title_full Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data
title_fullStr Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data
title_full_unstemmed Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data
title_short Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data
title_sort metadata stewardship in nanosafety research: community-driven organisation of metadata schemas to support fair nanoscience data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7602672/
https://www.ncbi.nlm.nih.gov/pubmed/33076428
http://dx.doi.org/10.3390/nano10102033
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