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Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data
The emergence of nanoinformatics as a key component of nanotechnology and nanosafety assessment for the prediction of engineered nanomaterials (NMs) properties, interactions, and hazards, and for grouping and read-across to reduce reliance on animal testing, has put the spotlight firmly on the need...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7602672/ https://www.ncbi.nlm.nih.gov/pubmed/33076428 http://dx.doi.org/10.3390/nano10102033 |
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author | Papadiamantis, Anastasios G. Klaessig, Frederick C. Exner, Thomas E. Hofer, Sabine Hofstaetter, Norbert Himly, Martin Williams, Marc A. Doganis, Philip Hoover, Mark D. Afantitis, Antreas Melagraki, Georgia Nolan, Tracy S. Rumble, John Maier, Dieter Lynch, Iseult |
author_facet | Papadiamantis, Anastasios G. Klaessig, Frederick C. Exner, Thomas E. Hofer, Sabine Hofstaetter, Norbert Himly, Martin Williams, Marc A. Doganis, Philip Hoover, Mark D. Afantitis, Antreas Melagraki, Georgia Nolan, Tracy S. Rumble, John Maier, Dieter Lynch, Iseult |
author_sort | Papadiamantis, Anastasios G. |
collection | PubMed |
description | The emergence of nanoinformatics as a key component of nanotechnology and nanosafety assessment for the prediction of engineered nanomaterials (NMs) properties, interactions, and hazards, and for grouping and read-across to reduce reliance on animal testing, has put the spotlight firmly on the need for access to high-quality, curated datasets. To date, the focus has been around what constitutes data quality and completeness, on the development of minimum reporting standards, and on the FAIR (findable, accessible, interoperable, and reusable) data principles. However, moving from the theoretical realm to practical implementation requires human intervention, which will be facilitated by the definition of clear roles and responsibilities across the complete data lifecycle and a deeper appreciation of what metadata is, and how to capture and index it. Here, we demonstrate, using specific worked case studies, how to organise the nano-community efforts to define metadata schemas, by organising the data management cycle as a joint effort of all players (data creators, analysts, curators, managers, and customers) supervised by the newly defined role of data shepherd. We propose that once researchers understand their tasks and responsibilities, they will naturally apply the available tools. Two case studies are presented (modelling of particle agglomeration for dose metrics, and consensus for NM dissolution), along with a survey of the currently implemented metadata schema in existing nanosafety databases. We conclude by offering recommendations on the steps forward and the needed workflows for metadata capture to ensure FAIR nanosafety data. |
format | Online Article Text |
id | pubmed-7602672 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-76026722020-11-01 Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data Papadiamantis, Anastasios G. Klaessig, Frederick C. Exner, Thomas E. Hofer, Sabine Hofstaetter, Norbert Himly, Martin Williams, Marc A. Doganis, Philip Hoover, Mark D. Afantitis, Antreas Melagraki, Georgia Nolan, Tracy S. Rumble, John Maier, Dieter Lynch, Iseult Nanomaterials (Basel) Article The emergence of nanoinformatics as a key component of nanotechnology and nanosafety assessment for the prediction of engineered nanomaterials (NMs) properties, interactions, and hazards, and for grouping and read-across to reduce reliance on animal testing, has put the spotlight firmly on the need for access to high-quality, curated datasets. To date, the focus has been around what constitutes data quality and completeness, on the development of minimum reporting standards, and on the FAIR (findable, accessible, interoperable, and reusable) data principles. However, moving from the theoretical realm to practical implementation requires human intervention, which will be facilitated by the definition of clear roles and responsibilities across the complete data lifecycle and a deeper appreciation of what metadata is, and how to capture and index it. Here, we demonstrate, using specific worked case studies, how to organise the nano-community efforts to define metadata schemas, by organising the data management cycle as a joint effort of all players (data creators, analysts, curators, managers, and customers) supervised by the newly defined role of data shepherd. We propose that once researchers understand their tasks and responsibilities, they will naturally apply the available tools. Two case studies are presented (modelling of particle agglomeration for dose metrics, and consensus for NM dissolution), along with a survey of the currently implemented metadata schema in existing nanosafety databases. We conclude by offering recommendations on the steps forward and the needed workflows for metadata capture to ensure FAIR nanosafety data. MDPI 2020-10-15 /pmc/articles/PMC7602672/ /pubmed/33076428 http://dx.doi.org/10.3390/nano10102033 Text en © 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Papadiamantis, Anastasios G. Klaessig, Frederick C. Exner, Thomas E. Hofer, Sabine Hofstaetter, Norbert Himly, Martin Williams, Marc A. Doganis, Philip Hoover, Mark D. Afantitis, Antreas Melagraki, Georgia Nolan, Tracy S. Rumble, John Maier, Dieter Lynch, Iseult Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data |
title | Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data |
title_full | Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data |
title_fullStr | Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data |
title_full_unstemmed | Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data |
title_short | Metadata Stewardship in Nanosafety Research: Community-Driven Organisation of Metadata Schemas to Support FAIR Nanoscience Data |
title_sort | metadata stewardship in nanosafety research: community-driven organisation of metadata schemas to support fair nanoscience data |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7602672/ https://www.ncbi.nlm.nih.gov/pubmed/33076428 http://dx.doi.org/10.3390/nano10102033 |
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