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Generative multi-adversarial network for striking the right balance in abdominal image segmentation

Purpose The identification of abnormalities that are relatively rare within otherwise normal anatomy is a major challenge for deep learning in the semantic segmentation of medical images. The small number of samples of the minority classes in the training data makes the learning of optimal classific...

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Autores principales: Rezaei, Mina, Näppi, Janne J., Lippert, Christoph, Meinel, Christoph, Yoshida, Hiroyuki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7603459/
https://www.ncbi.nlm.nih.gov/pubmed/32897490
http://dx.doi.org/10.1007/s11548-020-02254-4
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author Rezaei, Mina
Näppi, Janne J.
Lippert, Christoph
Meinel, Christoph
Yoshida, Hiroyuki
author_facet Rezaei, Mina
Näppi, Janne J.
Lippert, Christoph
Meinel, Christoph
Yoshida, Hiroyuki
author_sort Rezaei, Mina
collection PubMed
description Purpose The identification of abnormalities that are relatively rare within otherwise normal anatomy is a major challenge for deep learning in the semantic segmentation of medical images. The small number of samples of the minority classes in the training data makes the learning of optimal classification challenging, while the more frequently occurring samples of the majority class hamper the generalization of the classification boundary between infrequently occurring target objects and classes. In this paper, we developed a novel generative multi-adversarial network, called Ensemble-GAN, for mitigating this class imbalance problem in the semantic segmentation of abdominal images. Method The Ensemble-GAN framework is composed of a single-generator and a multi-discriminator variant for handling the class imbalance problem to provide a better generalization than existing approaches. The ensemble model aggregates the estimates of multiple models by training from different initializations and losses from various subsets of the training data. The single generator network analyzes the input image as a condition to predict a corresponding semantic segmentation image by use of feedback from the ensemble of discriminator networks. To evaluate the framework, we trained our framework on two public datasets, with different imbalance ratios and imaging modalities: the Chaos 2019 and the LiTS 2017. Result In terms of the F1 score, the accuracies of the semantic segmentation of healthy spleen, liver, and left and right kidneys were 0.93, 0.96, 0.90 and 0.94, respectively. The overall F1 scores for simultaneous segmentation of the lesions and liver were 0.83 and 0.94, respectively. Conclusion The proposed Ensemble-GAN framework demonstrated outstanding performance in the semantic segmentation of medical images in comparison with other approaches on popular abdominal imaging benchmarks. The Ensemble-GAN has the potential to segment abdominal images more accurately than human experts.
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spelling pubmed-76034592020-11-10 Generative multi-adversarial network for striking the right balance in abdominal image segmentation Rezaei, Mina Näppi, Janne J. Lippert, Christoph Meinel, Christoph Yoshida, Hiroyuki Int J Comput Assist Radiol Surg Original Article Purpose The identification of abnormalities that are relatively rare within otherwise normal anatomy is a major challenge for deep learning in the semantic segmentation of medical images. The small number of samples of the minority classes in the training data makes the learning of optimal classification challenging, while the more frequently occurring samples of the majority class hamper the generalization of the classification boundary between infrequently occurring target objects and classes. In this paper, we developed a novel generative multi-adversarial network, called Ensemble-GAN, for mitigating this class imbalance problem in the semantic segmentation of abdominal images. Method The Ensemble-GAN framework is composed of a single-generator and a multi-discriminator variant for handling the class imbalance problem to provide a better generalization than existing approaches. The ensemble model aggregates the estimates of multiple models by training from different initializations and losses from various subsets of the training data. The single generator network analyzes the input image as a condition to predict a corresponding semantic segmentation image by use of feedback from the ensemble of discriminator networks. To evaluate the framework, we trained our framework on two public datasets, with different imbalance ratios and imaging modalities: the Chaos 2019 and the LiTS 2017. Result In terms of the F1 score, the accuracies of the semantic segmentation of healthy spleen, liver, and left and right kidneys were 0.93, 0.96, 0.90 and 0.94, respectively. The overall F1 scores for simultaneous segmentation of the lesions and liver were 0.83 and 0.94, respectively. Conclusion The proposed Ensemble-GAN framework demonstrated outstanding performance in the semantic segmentation of medical images in comparison with other approaches on popular abdominal imaging benchmarks. The Ensemble-GAN has the potential to segment abdominal images more accurately than human experts. Springer International Publishing 2020-09-08 2020 /pmc/articles/PMC7603459/ /pubmed/32897490 http://dx.doi.org/10.1007/s11548-020-02254-4 Text en © The Author(s) 2020 Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Original Article
Rezaei, Mina
Näppi, Janne J.
Lippert, Christoph
Meinel, Christoph
Yoshida, Hiroyuki
Generative multi-adversarial network for striking the right balance in abdominal image segmentation
title Generative multi-adversarial network for striking the right balance in abdominal image segmentation
title_full Generative multi-adversarial network for striking the right balance in abdominal image segmentation
title_fullStr Generative multi-adversarial network for striking the right balance in abdominal image segmentation
title_full_unstemmed Generative multi-adversarial network for striking the right balance in abdominal image segmentation
title_short Generative multi-adversarial network for striking the right balance in abdominal image segmentation
title_sort generative multi-adversarial network for striking the right balance in abdominal image segmentation
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7603459/
https://www.ncbi.nlm.nih.gov/pubmed/32897490
http://dx.doi.org/10.1007/s11548-020-02254-4
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