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Machine learning in chemical reaction space
Chemical compound space refers to the vast set of all possible chemical compounds, estimated to contain 10(60) molecules. While intractable as a whole, modern machine learning (ML) is increasingly capable of accurately predicting molecular properties in important subsets. Here, we therefore engage i...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7603480/ https://www.ncbi.nlm.nih.gov/pubmed/33127879 http://dx.doi.org/10.1038/s41467-020-19267-x |
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author | Stocker, Sina Csányi, Gábor Reuter, Karsten Margraf, Johannes T. |
author_facet | Stocker, Sina Csányi, Gábor Reuter, Karsten Margraf, Johannes T. |
author_sort | Stocker, Sina |
collection | PubMed |
description | Chemical compound space refers to the vast set of all possible chemical compounds, estimated to contain 10(60) molecules. While intractable as a whole, modern machine learning (ML) is increasingly capable of accurately predicting molecular properties in important subsets. Here, we therefore engage in the ML-driven study of even larger reaction space. Central to chemistry as a science of transformations, this space contains all possible chemical reactions. As an important basis for ‘reactive’ ML, we establish a first-principles database (Rad-6) containing closed and open-shell organic molecules, along with an associated database of chemical reaction energies (Rad-6-RE). We show that the special topology of reaction spaces, with central hub molecules involved in multiple reactions, requires a modification of existing compound space ML-concepts. Showcased by the application to methane combustion, we demonstrate that the learned reaction energies offer a non-empirical route to rationally extract reduced reaction networks for detailed microkinetic analyses. |
format | Online Article Text |
id | pubmed-7603480 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-76034802020-11-10 Machine learning in chemical reaction space Stocker, Sina Csányi, Gábor Reuter, Karsten Margraf, Johannes T. Nat Commun Article Chemical compound space refers to the vast set of all possible chemical compounds, estimated to contain 10(60) molecules. While intractable as a whole, modern machine learning (ML) is increasingly capable of accurately predicting molecular properties in important subsets. Here, we therefore engage in the ML-driven study of even larger reaction space. Central to chemistry as a science of transformations, this space contains all possible chemical reactions. As an important basis for ‘reactive’ ML, we establish a first-principles database (Rad-6) containing closed and open-shell organic molecules, along with an associated database of chemical reaction energies (Rad-6-RE). We show that the special topology of reaction spaces, with central hub molecules involved in multiple reactions, requires a modification of existing compound space ML-concepts. Showcased by the application to methane combustion, we demonstrate that the learned reaction energies offer a non-empirical route to rationally extract reduced reaction networks for detailed microkinetic analyses. Nature Publishing Group UK 2020-10-30 /pmc/articles/PMC7603480/ /pubmed/33127879 http://dx.doi.org/10.1038/s41467-020-19267-x Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Stocker, Sina Csányi, Gábor Reuter, Karsten Margraf, Johannes T. Machine learning in chemical reaction space |
title | Machine learning in chemical reaction space |
title_full | Machine learning in chemical reaction space |
title_fullStr | Machine learning in chemical reaction space |
title_full_unstemmed | Machine learning in chemical reaction space |
title_short | Machine learning in chemical reaction space |
title_sort | machine learning in chemical reaction space |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7603480/ https://www.ncbi.nlm.nih.gov/pubmed/33127879 http://dx.doi.org/10.1038/s41467-020-19267-x |
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