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A Novel Signature of 23 Immunity-Related Gene Pairs Is Prognostic of Cutaneous Melanoma

In this study, we aimed to identify an immune-related signature for predicting prognosis in cutaneous melanoma (CM). Sample data from The Cancer Genome Atlas (TCGA; n = 460) were used to develop a prognostic signature with 23 immune-related gene pairs (23 IRGPs) for CM. Patients were divided into hi...

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Autores principales: Xue, Ya-Nan, Xue, Yi-Nan, Wang, Zheng-Cai, Mo, Yong-Zhen, Wang, Pin-Yan, Tan, Wei-Qiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7604355/
https://www.ncbi.nlm.nih.gov/pubmed/33193373
http://dx.doi.org/10.3389/fimmu.2020.576914
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author Xue, Ya-Nan
Xue, Yi-Nan
Wang, Zheng-Cai
Mo, Yong-Zhen
Wang, Pin-Yan
Tan, Wei-Qiang
author_facet Xue, Ya-Nan
Xue, Yi-Nan
Wang, Zheng-Cai
Mo, Yong-Zhen
Wang, Pin-Yan
Tan, Wei-Qiang
author_sort Xue, Ya-Nan
collection PubMed
description In this study, we aimed to identify an immune-related signature for predicting prognosis in cutaneous melanoma (CM). Sample data from The Cancer Genome Atlas (TCGA; n = 460) were used to develop a prognostic signature with 23 immune-related gene pairs (23 IRGPs) for CM. Patients were divided into high- and low-risk groups using the TCGA and validation datasets GSE65904 (n = 214), GSE59455 (n = 141), and GSE22153 (n = 79). The ability of the 23-IRGP signature to predict CM was precise, with the stratified high-risk groups showing a poor prognosis, and it had a significant predictive power when used for immune microenvironment and biological analyses. We subsequently established a novel promising prognostic model in CM to determine the association between the immune microenvironment and CM patient results. This approach may be used to discover signatures in other diseases while avoiding the technical biases associated with other platforms.
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spelling pubmed-76043552020-11-13 A Novel Signature of 23 Immunity-Related Gene Pairs Is Prognostic of Cutaneous Melanoma Xue, Ya-Nan Xue, Yi-Nan Wang, Zheng-Cai Mo, Yong-Zhen Wang, Pin-Yan Tan, Wei-Qiang Front Immunol Immunology In this study, we aimed to identify an immune-related signature for predicting prognosis in cutaneous melanoma (CM). Sample data from The Cancer Genome Atlas (TCGA; n = 460) were used to develop a prognostic signature with 23 immune-related gene pairs (23 IRGPs) for CM. Patients were divided into high- and low-risk groups using the TCGA and validation datasets GSE65904 (n = 214), GSE59455 (n = 141), and GSE22153 (n = 79). The ability of the 23-IRGP signature to predict CM was precise, with the stratified high-risk groups showing a poor prognosis, and it had a significant predictive power when used for immune microenvironment and biological analyses. We subsequently established a novel promising prognostic model in CM to determine the association between the immune microenvironment and CM patient results. This approach may be used to discover signatures in other diseases while avoiding the technical biases associated with other platforms. Frontiers Media S.A. 2020-10-19 /pmc/articles/PMC7604355/ /pubmed/33193373 http://dx.doi.org/10.3389/fimmu.2020.576914 Text en Copyright © 2020 Xue, Xue, Wang, Mo, Wang and Tan http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Xue, Ya-Nan
Xue, Yi-Nan
Wang, Zheng-Cai
Mo, Yong-Zhen
Wang, Pin-Yan
Tan, Wei-Qiang
A Novel Signature of 23 Immunity-Related Gene Pairs Is Prognostic of Cutaneous Melanoma
title A Novel Signature of 23 Immunity-Related Gene Pairs Is Prognostic of Cutaneous Melanoma
title_full A Novel Signature of 23 Immunity-Related Gene Pairs Is Prognostic of Cutaneous Melanoma
title_fullStr A Novel Signature of 23 Immunity-Related Gene Pairs Is Prognostic of Cutaneous Melanoma
title_full_unstemmed A Novel Signature of 23 Immunity-Related Gene Pairs Is Prognostic of Cutaneous Melanoma
title_short A Novel Signature of 23 Immunity-Related Gene Pairs Is Prognostic of Cutaneous Melanoma
title_sort novel signature of 23 immunity-related gene pairs is prognostic of cutaneous melanoma
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7604355/
https://www.ncbi.nlm.nih.gov/pubmed/33193373
http://dx.doi.org/10.3389/fimmu.2020.576914
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