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Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations
Fast and automated image quality assessment (IQA) for diffusion MR images is a crucial step for swiftly making a rescan decision during or after the scanning session. However, learning a model for this task is challenging as the number of annotated data is limited and the annotation labels might not...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7606371/ https://www.ncbi.nlm.nih.gov/pubmed/32746115 http://dx.doi.org/10.1109/TMI.2020.3002708 |
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author | Liu, Siyuan Thung, Kim-Han Lin, Weili Shen, Dinggang Yap, Pew-Thian |
author_facet | Liu, Siyuan Thung, Kim-Han Lin, Weili Shen, Dinggang Yap, Pew-Thian |
author_sort | Liu, Siyuan |
collection | PubMed |
description | Fast and automated image quality assessment (IQA) for diffusion MR images is a crucial step for swiftly making a rescan decision during or after the scanning session. However, learning a model for this task is challenging as the number of annotated data is limited and the annotation labels might not always be correct. As a remedy, we will introduce in this paper an automatic image quality assessment (IQA) method based on hierarchical non-local residual networks for pediatric diffusion MR images. Our IQA is performed in three sequential stages, i.e., 1) slice-wise IQA, where a nonlocal residual network is first pre-trained to annotate each slice with an initial quality rating (i.e., pass/questionable/fail), which is subsequently refined via iterative semi-supervised learning and slice self-training; 2) volume-wise IQA, which agglomerates the features extracted from slices of a volume, and uses a nonlocal network to annotate the quality rating for each volume via iterative volume self-training; and 3) subject-wise IQA, which ensembles the volumetric IQA results to determine the overall image quality pertaining to a subject. Experimental results demonstrate that our method, trained using only samples of modest size, exhibits great generalizability, and is capable of conducting rapid hierarchical IQA with near-perfect accuracy. |
format | Online Article Text |
id | pubmed-7606371 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
record_format | MEDLINE/PubMed |
spelling | pubmed-76063712021-11-01 Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations Liu, Siyuan Thung, Kim-Han Lin, Weili Shen, Dinggang Yap, Pew-Thian IEEE Trans Med Imaging Article Fast and automated image quality assessment (IQA) for diffusion MR images is a crucial step for swiftly making a rescan decision during or after the scanning session. However, learning a model for this task is challenging as the number of annotated data is limited and the annotation labels might not always be correct. As a remedy, we will introduce in this paper an automatic image quality assessment (IQA) method based on hierarchical non-local residual networks for pediatric diffusion MR images. Our IQA is performed in three sequential stages, i.e., 1) slice-wise IQA, where a nonlocal residual network is first pre-trained to annotate each slice with an initial quality rating (i.e., pass/questionable/fail), which is subsequently refined via iterative semi-supervised learning and slice self-training; 2) volume-wise IQA, which agglomerates the features extracted from slices of a volume, and uses a nonlocal network to annotate the quality rating for each volume via iterative volume self-training; and 3) subject-wise IQA, which ensembles the volumetric IQA results to determine the overall image quality pertaining to a subject. Experimental results demonstrate that our method, trained using only samples of modest size, exhibits great generalizability, and is capable of conducting rapid hierarchical IQA with near-perfect accuracy. 2020-10-28 2020-11 /pmc/articles/PMC7606371/ /pubmed/32746115 http://dx.doi.org/10.1109/TMI.2020.3002708 Text en http://creativecommons.org/licenses/by/4.0/ Personal use is permitted, but republication/redistribution requires IEEE permission. |
spellingShingle | Article Liu, Siyuan Thung, Kim-Han Lin, Weili Shen, Dinggang Yap, Pew-Thian Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations |
title | Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations |
title_full | Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations |
title_fullStr | Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations |
title_full_unstemmed | Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations |
title_short | Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations |
title_sort | hierarchical nonlocal residual networks for image quality assessment of pediatric diffusion mri with limited and noisy annotations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7606371/ https://www.ncbi.nlm.nih.gov/pubmed/32746115 http://dx.doi.org/10.1109/TMI.2020.3002708 |
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