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Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations

Fast and automated image quality assessment (IQA) for diffusion MR images is a crucial step for swiftly making a rescan decision during or after the scanning session. However, learning a model for this task is challenging as the number of annotated data is limited and the annotation labels might not...

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Autores principales: Liu, Siyuan, Thung, Kim-Han, Lin, Weili, Shen, Dinggang, Yap, Pew-Thian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7606371/
https://www.ncbi.nlm.nih.gov/pubmed/32746115
http://dx.doi.org/10.1109/TMI.2020.3002708
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author Liu, Siyuan
Thung, Kim-Han
Lin, Weili
Shen, Dinggang
Yap, Pew-Thian
author_facet Liu, Siyuan
Thung, Kim-Han
Lin, Weili
Shen, Dinggang
Yap, Pew-Thian
author_sort Liu, Siyuan
collection PubMed
description Fast and automated image quality assessment (IQA) for diffusion MR images is a crucial step for swiftly making a rescan decision during or after the scanning session. However, learning a model for this task is challenging as the number of annotated data is limited and the annotation labels might not always be correct. As a remedy, we will introduce in this paper an automatic image quality assessment (IQA) method based on hierarchical non-local residual networks for pediatric diffusion MR images. Our IQA is performed in three sequential stages, i.e., 1) slice-wise IQA, where a nonlocal residual network is first pre-trained to annotate each slice with an initial quality rating (i.e., pass/questionable/fail), which is subsequently refined via iterative semi-supervised learning and slice self-training; 2) volume-wise IQA, which agglomerates the features extracted from slices of a volume, and uses a nonlocal network to annotate the quality rating for each volume via iterative volume self-training; and 3) subject-wise IQA, which ensembles the volumetric IQA results to determine the overall image quality pertaining to a subject. Experimental results demonstrate that our method, trained using only samples of modest size, exhibits great generalizability, and is capable of conducting rapid hierarchical IQA with near-perfect accuracy.
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spelling pubmed-76063712021-11-01 Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations Liu, Siyuan Thung, Kim-Han Lin, Weili Shen, Dinggang Yap, Pew-Thian IEEE Trans Med Imaging Article Fast and automated image quality assessment (IQA) for diffusion MR images is a crucial step for swiftly making a rescan decision during or after the scanning session. However, learning a model for this task is challenging as the number of annotated data is limited and the annotation labels might not always be correct. As a remedy, we will introduce in this paper an automatic image quality assessment (IQA) method based on hierarchical non-local residual networks for pediatric diffusion MR images. Our IQA is performed in three sequential stages, i.e., 1) slice-wise IQA, where a nonlocal residual network is first pre-trained to annotate each slice with an initial quality rating (i.e., pass/questionable/fail), which is subsequently refined via iterative semi-supervised learning and slice self-training; 2) volume-wise IQA, which agglomerates the features extracted from slices of a volume, and uses a nonlocal network to annotate the quality rating for each volume via iterative volume self-training; and 3) subject-wise IQA, which ensembles the volumetric IQA results to determine the overall image quality pertaining to a subject. Experimental results demonstrate that our method, trained using only samples of modest size, exhibits great generalizability, and is capable of conducting rapid hierarchical IQA with near-perfect accuracy. 2020-10-28 2020-11 /pmc/articles/PMC7606371/ /pubmed/32746115 http://dx.doi.org/10.1109/TMI.2020.3002708 Text en http://creativecommons.org/licenses/by/4.0/ Personal use is permitted, but republication/redistribution requires IEEE permission.
spellingShingle Article
Liu, Siyuan
Thung, Kim-Han
Lin, Weili
Shen, Dinggang
Yap, Pew-Thian
Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations
title Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations
title_full Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations
title_fullStr Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations
title_full_unstemmed Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations
title_short Hierarchical Nonlocal Residual Networks for Image Quality Assessment of Pediatric Diffusion MRI with Limited and Noisy Annotations
title_sort hierarchical nonlocal residual networks for image quality assessment of pediatric diffusion mri with limited and noisy annotations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7606371/
https://www.ncbi.nlm.nih.gov/pubmed/32746115
http://dx.doi.org/10.1109/TMI.2020.3002708
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