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Developing a pathway-independent and full-autonomous global resource allocation strategy to dynamically switching phenotypic states

A grand challenge of biological chemical production is the competition between synthetic circuits and host genes for limited cellular resources. Quorum sensing (QS)-based dynamic pathway regulations provide a pathway-independent way to rebalance metabolic flux over the course of the fermentation. Mo...

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Autores principales: Wu, Junjun, Bao, Meijiao, Duan, Xuguo, Zhou, Peng, Chen, Caiwen, Gao, Jiahua, Cheng, Shiyao, Zhuang, Qianqian, Zhao, Zhijun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7606477/
https://www.ncbi.nlm.nih.gov/pubmed/33139748
http://dx.doi.org/10.1038/s41467-020-19432-2
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author Wu, Junjun
Bao, Meijiao
Duan, Xuguo
Zhou, Peng
Chen, Caiwen
Gao, Jiahua
Cheng, Shiyao
Zhuang, Qianqian
Zhao, Zhijun
author_facet Wu, Junjun
Bao, Meijiao
Duan, Xuguo
Zhou, Peng
Chen, Caiwen
Gao, Jiahua
Cheng, Shiyao
Zhuang, Qianqian
Zhao, Zhijun
author_sort Wu, Junjun
collection PubMed
description A grand challenge of biological chemical production is the competition between synthetic circuits and host genes for limited cellular resources. Quorum sensing (QS)-based dynamic pathway regulations provide a pathway-independent way to rebalance metabolic flux over the course of the fermentation. Most cases, however, these pathway-independent strategies only have capacity for a single QS circuit functional in one cell. Furthermore, current dynamic regulations mainly provide localized control of metabolic flux. Here, with the aid of engineering synthetic orthogonal quorum-related circuits and global mRNA decay, we report a pathway-independent dynamic resource allocation strategy, which allows us to independently controlling two different phenotypic states to globally redistribute cellular resources toward synthetic circuits. The strategy which could pathway-independently and globally self-regulate two desired cell phenotypes including growth and production phenotypes could totally eliminate the need for human supervision of the entire fermentation.
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spelling pubmed-76064772020-11-10 Developing a pathway-independent and full-autonomous global resource allocation strategy to dynamically switching phenotypic states Wu, Junjun Bao, Meijiao Duan, Xuguo Zhou, Peng Chen, Caiwen Gao, Jiahua Cheng, Shiyao Zhuang, Qianqian Zhao, Zhijun Nat Commun Article A grand challenge of biological chemical production is the competition between synthetic circuits and host genes for limited cellular resources. Quorum sensing (QS)-based dynamic pathway regulations provide a pathway-independent way to rebalance metabolic flux over the course of the fermentation. Most cases, however, these pathway-independent strategies only have capacity for a single QS circuit functional in one cell. Furthermore, current dynamic regulations mainly provide localized control of metabolic flux. Here, with the aid of engineering synthetic orthogonal quorum-related circuits and global mRNA decay, we report a pathway-independent dynamic resource allocation strategy, which allows us to independently controlling two different phenotypic states to globally redistribute cellular resources toward synthetic circuits. The strategy which could pathway-independently and globally self-regulate two desired cell phenotypes including growth and production phenotypes could totally eliminate the need for human supervision of the entire fermentation. Nature Publishing Group UK 2020-11-02 /pmc/articles/PMC7606477/ /pubmed/33139748 http://dx.doi.org/10.1038/s41467-020-19432-2 Text en © The Author(s) 2020 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Wu, Junjun
Bao, Meijiao
Duan, Xuguo
Zhou, Peng
Chen, Caiwen
Gao, Jiahua
Cheng, Shiyao
Zhuang, Qianqian
Zhao, Zhijun
Developing a pathway-independent and full-autonomous global resource allocation strategy to dynamically switching phenotypic states
title Developing a pathway-independent and full-autonomous global resource allocation strategy to dynamically switching phenotypic states
title_full Developing a pathway-independent and full-autonomous global resource allocation strategy to dynamically switching phenotypic states
title_fullStr Developing a pathway-independent and full-autonomous global resource allocation strategy to dynamically switching phenotypic states
title_full_unstemmed Developing a pathway-independent and full-autonomous global resource allocation strategy to dynamically switching phenotypic states
title_short Developing a pathway-independent and full-autonomous global resource allocation strategy to dynamically switching phenotypic states
title_sort developing a pathway-independent and full-autonomous global resource allocation strategy to dynamically switching phenotypic states
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7606477/
https://www.ncbi.nlm.nih.gov/pubmed/33139748
http://dx.doi.org/10.1038/s41467-020-19432-2
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