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Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation
We demonstrate the use of classification methods that are well-suited for forensic toxicology applications. The methods are based on penalized logistic regression, can be employed when separation occurs in a two-class classification setting, and allow for the calculation of likelihood ratios. A case...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2020
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7609892/ https://www.ncbi.nlm.nih.gov/pubmed/33195014 http://dx.doi.org/10.3389/fchem.2020.00738 |
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author | Biosa, Giulia Giurghita, Diana Alladio, Eugenio Vincenti, Marco Neocleous, Tereza |
author_facet | Biosa, Giulia Giurghita, Diana Alladio, Eugenio Vincenti, Marco Neocleous, Tereza |
author_sort | Biosa, Giulia |
collection | PubMed |
description | We demonstrate the use of classification methods that are well-suited for forensic toxicology applications. The methods are based on penalized logistic regression, can be employed when separation occurs in a two-class classification setting, and allow for the calculation of likelihood ratios. A case study of this framework is demonstrated on alcohol biomarker data for classifying chronic alcohol drinkers. The approach can be extended to applications in the fields of analytical and forensic chemistry, where it is a common feature to have a large number of biomarkers, and allows for flexibility in model assumptions such as multivariate normality. While some penalized regression methods have been introduced previously in forensic applications, our study is meant to encourage practitioners to use these powerful methods more widely. As such, based upon our proof-of-concept studies, we also introduce an R Shiny online tool with an intuitive interface able to perform several classification methods. We anticipate that this open-source and free-of-charge application will provide a powerful and dynamic tool to infer the LR value in case of classification tasks. |
format | Online Article Text |
id | pubmed-7609892 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2020 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-76098922020-11-13 Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation Biosa, Giulia Giurghita, Diana Alladio, Eugenio Vincenti, Marco Neocleous, Tereza Front Chem Chemistry We demonstrate the use of classification methods that are well-suited for forensic toxicology applications. The methods are based on penalized logistic regression, can be employed when separation occurs in a two-class classification setting, and allow for the calculation of likelihood ratios. A case study of this framework is demonstrated on alcohol biomarker data for classifying chronic alcohol drinkers. The approach can be extended to applications in the fields of analytical and forensic chemistry, where it is a common feature to have a large number of biomarkers, and allows for flexibility in model assumptions such as multivariate normality. While some penalized regression methods have been introduced previously in forensic applications, our study is meant to encourage practitioners to use these powerful methods more widely. As such, based upon our proof-of-concept studies, we also introduce an R Shiny online tool with an intuitive interface able to perform several classification methods. We anticipate that this open-source and free-of-charge application will provide a powerful and dynamic tool to infer the LR value in case of classification tasks. Frontiers Media S.A. 2020-10-21 /pmc/articles/PMC7609892/ /pubmed/33195014 http://dx.doi.org/10.3389/fchem.2020.00738 Text en Copyright © 2020 Biosa, Giurghita, Alladio, Vincenti and Neocleous. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Chemistry Biosa, Giulia Giurghita, Diana Alladio, Eugenio Vincenti, Marco Neocleous, Tereza Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation |
title | Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation |
title_full | Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation |
title_fullStr | Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation |
title_full_unstemmed | Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation |
title_short | Evaluation of Forensic Data Using Logistic Regression-Based Classification Methods and an R Shiny Implementation |
title_sort | evaluation of forensic data using logistic regression-based classification methods and an r shiny implementation |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7609892/ https://www.ncbi.nlm.nih.gov/pubmed/33195014 http://dx.doi.org/10.3389/fchem.2020.00738 |
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