Cargando…
Stochastic approximation cut algorithm for inference in modularized Bayesian models
Bayesian modelling enables us to accommodate complex forms of data and make a comprehensive inference, but the effect of partial misspecification of the model is a concern. One approach in this setting is to modularize the model and prevent feedback from suspect modules, using a cut model. After obs...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7612314/ https://www.ncbi.nlm.nih.gov/pubmed/35125678 http://dx.doi.org/10.1007/s11222-021-10070-2 |
_version_ | 1783605355479040000 |
---|---|
author | Liu, Yang Goudie, Robert J. B. |
author_facet | Liu, Yang Goudie, Robert J. B. |
author_sort | Liu, Yang |
collection | PubMed |
description | Bayesian modelling enables us to accommodate complex forms of data and make a comprehensive inference, but the effect of partial misspecification of the model is a concern. One approach in this setting is to modularize the model and prevent feedback from suspect modules, using a cut model. After observing data, this leads to the cut distribution which normally does not have a closed form. Previous studies have proposed algorithms to sample from this distribution, but these algorithms have unclear theoretical convergence properties. To address this, we propose a new algorithm called the stochastic approximation cut (SACut) algorithm as an alternative. The algorithm is divided into two parallel chains. The main chain targets an approximation to the cut distribution; the auxiliary chain is used to form an adaptive proposal distribution for the main chain. We prove convergence of the samples drawn by the proposed algorithm and present the exact limit. Although SACut is biased, since the main chain does not target the exact cut distribution, we prove this bias can be reduced geometrically by increasing a user-chosen tuning parameter. In addition, parallel computing can be easily adopted for SACut, which greatly reduces computation time. |
format | Online Article Text |
id | pubmed-7612314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
record_format | MEDLINE/PubMed |
spelling | pubmed-76123142022-02-03 Stochastic approximation cut algorithm for inference in modularized Bayesian models Liu, Yang Goudie, Robert J. B. Stat Comput Article Bayesian modelling enables us to accommodate complex forms of data and make a comprehensive inference, but the effect of partial misspecification of the model is a concern. One approach in this setting is to modularize the model and prevent feedback from suspect modules, using a cut model. After observing data, this leads to the cut distribution which normally does not have a closed form. Previous studies have proposed algorithms to sample from this distribution, but these algorithms have unclear theoretical convergence properties. To address this, we propose a new algorithm called the stochastic approximation cut (SACut) algorithm as an alternative. The algorithm is divided into two parallel chains. The main chain targets an approximation to the cut distribution; the auxiliary chain is used to form an adaptive proposal distribution for the main chain. We prove convergence of the samples drawn by the proposed algorithm and present the exact limit. Although SACut is biased, since the main chain does not target the exact cut distribution, we prove this bias can be reduced geometrically by increasing a user-chosen tuning parameter. In addition, parallel computing can be easily adopted for SACut, which greatly reduces computation time. 2021-12-06 /pmc/articles/PMC7612314/ /pubmed/35125678 http://dx.doi.org/10.1007/s11222-021-10070-2 Text en https://creativecommons.org/licenses/by/4.0/This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit https://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Liu, Yang Goudie, Robert J. B. Stochastic approximation cut algorithm for inference in modularized Bayesian models |
title | Stochastic approximation cut algorithm for inference in modularized Bayesian models |
title_full | Stochastic approximation cut algorithm for inference in modularized Bayesian models |
title_fullStr | Stochastic approximation cut algorithm for inference in modularized Bayesian models |
title_full_unstemmed | Stochastic approximation cut algorithm for inference in modularized Bayesian models |
title_short | Stochastic approximation cut algorithm for inference in modularized Bayesian models |
title_sort | stochastic approximation cut algorithm for inference in modularized bayesian models |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7612314/ https://www.ncbi.nlm.nih.gov/pubmed/35125678 http://dx.doi.org/10.1007/s11222-021-10070-2 |
work_keys_str_mv | AT liuyang stochasticapproximationcutalgorithmforinferenceinmodularizedbayesianmodels AT goudierobertjb stochasticapproximationcutalgorithmforinferenceinmodularizedbayesianmodels |