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Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19

Drug repurposing provides a rapid approach to meet the urgent need for therapeutics to address COVID-19. To identify therapeutic targets relevant to COVID-19, we conducted Mendelian randomization (MR) analyses, deriving genetic instruments based on transcriptomic and proteomic data for 1,263 actiona...

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Autores principales: Gaziano, Liam, Giambartolomei, Claudia, Pereira, Alexandre C, Gaulton, Anna, Posner, Daniel C, Swanson, Sonja A, Ho, Yuk-Lam, Iyengar, Sudha K, Kosik, Nicole M, Vujkovic, Marijana, Gagnon, David R, Bento, A Patrícia, Barrio-Hernandez, Inigo, Rönnblom, Lars, Hagberg, Niklas, Lundtoft, Christian, Langenberg, Claudia, Pietzner, Maik, Valentine, Dennis, Gustincich, Stefano, Tartaglia, Gian Gaetano, Allara, Elias, Surendran, Praveen, Burgess, Stephen, Zhao, Jing Hua, Peters, James E, Prins, Bram P, Di Angelantonio, Emanuele, Devineni, Poornima, Shi, Yunling, Lynch, Kristine E, DuVall, Scott L, Garcon, Helene, Thomann, Lauren O, Zhou, Jin J, Gorman, Bryan R, Huffman, Jennifer E, O'Donnell, Christopher J, Tsao, Philip S, Beckham, Jean C, Pyarajan, Saiju, Muralidhar, Sumitra, Huang, Grant D, Ramoni, Rachel, Beltrao, Pedro, Danesh, John, Hung, Adriana M, Chang, Kyong-Mi, Sun, Yan V, Joseph, Jacob, Leach, Andrew R, Edwards, Todd L, Cho, Kelly, Gaziano, J Michael, Butterworth, Adam S, Casas, Juan P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7612986/
https://www.ncbi.nlm.nih.gov/pubmed/33837377
http://dx.doi.org/10.1038/s41591-021-01310-z
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author Gaziano, Liam
Giambartolomei, Claudia
Pereira, Alexandre C
Gaulton, Anna
Posner, Daniel C
Swanson, Sonja A
Ho, Yuk-Lam
Iyengar, Sudha K
Kosik, Nicole M
Vujkovic, Marijana
Gagnon, David R
Bento, A Patrícia
Barrio-Hernandez, Inigo
Rönnblom, Lars
Hagberg, Niklas
Lundtoft, Christian
Langenberg, Claudia
Pietzner, Maik
Valentine, Dennis
Gustincich, Stefano
Tartaglia, Gian Gaetano
Allara, Elias
Surendran, Praveen
Burgess, Stephen
Zhao, Jing Hua
Peters, James E
Prins, Bram P
Di Angelantonio, Emanuele
Devineni, Poornima
Shi, Yunling
Lynch, Kristine E
DuVall, Scott L
Garcon, Helene
Thomann, Lauren O
Zhou, Jin J
Gorman, Bryan R
Huffman, Jennifer E
O'Donnell, Christopher J
Tsao, Philip S
Beckham, Jean C
Pyarajan, Saiju
Muralidhar, Sumitra
Huang, Grant D
Ramoni, Rachel
Beltrao, Pedro
Danesh, John
Hung, Adriana M
Chang, Kyong-Mi
Sun, Yan V
Joseph, Jacob
Leach, Andrew R
Edwards, Todd L
Cho, Kelly
Gaziano, J Michael
Butterworth, Adam S
Casas, Juan P
author_facet Gaziano, Liam
Giambartolomei, Claudia
Pereira, Alexandre C
Gaulton, Anna
Posner, Daniel C
Swanson, Sonja A
Ho, Yuk-Lam
Iyengar, Sudha K
Kosik, Nicole M
Vujkovic, Marijana
Gagnon, David R
Bento, A Patrícia
Barrio-Hernandez, Inigo
Rönnblom, Lars
Hagberg, Niklas
Lundtoft, Christian
Langenberg, Claudia
Pietzner, Maik
Valentine, Dennis
Gustincich, Stefano
Tartaglia, Gian Gaetano
Allara, Elias
Surendran, Praveen
Burgess, Stephen
Zhao, Jing Hua
Peters, James E
Prins, Bram P
Di Angelantonio, Emanuele
Devineni, Poornima
Shi, Yunling
Lynch, Kristine E
DuVall, Scott L
Garcon, Helene
Thomann, Lauren O
Zhou, Jin J
Gorman, Bryan R
Huffman, Jennifer E
O'Donnell, Christopher J
Tsao, Philip S
Beckham, Jean C
Pyarajan, Saiju
Muralidhar, Sumitra
Huang, Grant D
Ramoni, Rachel
Beltrao, Pedro
Danesh, John
Hung, Adriana M
Chang, Kyong-Mi
Sun, Yan V
Joseph, Jacob
Leach, Andrew R
Edwards, Todd L
Cho, Kelly
Gaziano, J Michael
Butterworth, Adam S
Casas, Juan P
author_sort Gaziano, Liam
collection PubMed
description Drug repurposing provides a rapid approach to meet the urgent need for therapeutics to address COVID-19. To identify therapeutic targets relevant to COVID-19, we conducted Mendelian randomization (MR) analyses, deriving genetic instruments based on transcriptomic and proteomic data for 1,263 actionable proteins that are targeted by approved drugs or in clinical phase of drug development. Using summary statistics from the Host Genetics Initiative and the Million Veteran Program, we studied 7,554 patients hospitalized with COVID-19 and >1 million controls. We found significant Mendelian randomization results for three proteins (ACE2: P=1.6×10(-6), IFNAR2: P=9.8×10(-11), and IL-10RB: P=2.3×10(-14)) using cis-eQTL genetic instruments that also had strong evidence for colocalization with COVID-19 hospitalization. To disentangle the shared eQTL signal for IL10RB and IFNAR2, we conducted phenome-wide association scans and pathway enrichment analysis, which suggested that IFNAR2 is more likely to play a role in COVID-19 hospitalization. Our findings prioritize trials of drugs targeting IFNAR2 and ACE2 for early management of COVID-19.
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spelling pubmed-76129862022-07-05 Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19 Gaziano, Liam Giambartolomei, Claudia Pereira, Alexandre C Gaulton, Anna Posner, Daniel C Swanson, Sonja A Ho, Yuk-Lam Iyengar, Sudha K Kosik, Nicole M Vujkovic, Marijana Gagnon, David R Bento, A Patrícia Barrio-Hernandez, Inigo Rönnblom, Lars Hagberg, Niklas Lundtoft, Christian Langenberg, Claudia Pietzner, Maik Valentine, Dennis Gustincich, Stefano Tartaglia, Gian Gaetano Allara, Elias Surendran, Praveen Burgess, Stephen Zhao, Jing Hua Peters, James E Prins, Bram P Di Angelantonio, Emanuele Devineni, Poornima Shi, Yunling Lynch, Kristine E DuVall, Scott L Garcon, Helene Thomann, Lauren O Zhou, Jin J Gorman, Bryan R Huffman, Jennifer E O'Donnell, Christopher J Tsao, Philip S Beckham, Jean C Pyarajan, Saiju Muralidhar, Sumitra Huang, Grant D Ramoni, Rachel Beltrao, Pedro Danesh, John Hung, Adriana M Chang, Kyong-Mi Sun, Yan V Joseph, Jacob Leach, Andrew R Edwards, Todd L Cho, Kelly Gaziano, J Michael Butterworth, Adam S Casas, Juan P Nat Med Article Drug repurposing provides a rapid approach to meet the urgent need for therapeutics to address COVID-19. To identify therapeutic targets relevant to COVID-19, we conducted Mendelian randomization (MR) analyses, deriving genetic instruments based on transcriptomic and proteomic data for 1,263 actionable proteins that are targeted by approved drugs or in clinical phase of drug development. Using summary statistics from the Host Genetics Initiative and the Million Veteran Program, we studied 7,554 patients hospitalized with COVID-19 and >1 million controls. We found significant Mendelian randomization results for three proteins (ACE2: P=1.6×10(-6), IFNAR2: P=9.8×10(-11), and IL-10RB: P=2.3×10(-14)) using cis-eQTL genetic instruments that also had strong evidence for colocalization with COVID-19 hospitalization. To disentangle the shared eQTL signal for IL10RB and IFNAR2, we conducted phenome-wide association scans and pathway enrichment analysis, which suggested that IFNAR2 is more likely to play a role in COVID-19 hospitalization. Our findings prioritize trials of drugs targeting IFNAR2 and ACE2 for early management of COVID-19. 2021-04-01 2021-04-09 /pmc/articles/PMC7612986/ /pubmed/33837377 http://dx.doi.org/10.1038/s41591-021-01310-z Text en https://creativecommons.org/licenses/by/4.0/This work is licensed under a CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/) International license.
spellingShingle Article
Gaziano, Liam
Giambartolomei, Claudia
Pereira, Alexandre C
Gaulton, Anna
Posner, Daniel C
Swanson, Sonja A
Ho, Yuk-Lam
Iyengar, Sudha K
Kosik, Nicole M
Vujkovic, Marijana
Gagnon, David R
Bento, A Patrícia
Barrio-Hernandez, Inigo
Rönnblom, Lars
Hagberg, Niklas
Lundtoft, Christian
Langenberg, Claudia
Pietzner, Maik
Valentine, Dennis
Gustincich, Stefano
Tartaglia, Gian Gaetano
Allara, Elias
Surendran, Praveen
Burgess, Stephen
Zhao, Jing Hua
Peters, James E
Prins, Bram P
Di Angelantonio, Emanuele
Devineni, Poornima
Shi, Yunling
Lynch, Kristine E
DuVall, Scott L
Garcon, Helene
Thomann, Lauren O
Zhou, Jin J
Gorman, Bryan R
Huffman, Jennifer E
O'Donnell, Christopher J
Tsao, Philip S
Beckham, Jean C
Pyarajan, Saiju
Muralidhar, Sumitra
Huang, Grant D
Ramoni, Rachel
Beltrao, Pedro
Danesh, John
Hung, Adriana M
Chang, Kyong-Mi
Sun, Yan V
Joseph, Jacob
Leach, Andrew R
Edwards, Todd L
Cho, Kelly
Gaziano, J Michael
Butterworth, Adam S
Casas, Juan P
Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19
title Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19
title_full Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19
title_fullStr Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19
title_full_unstemmed Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19
title_short Actionable druggable genome-wide Mendelian randomization identifies repurposing opportunities for COVID-19
title_sort actionable druggable genome-wide mendelian randomization identifies repurposing opportunities for covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7612986/
https://www.ncbi.nlm.nih.gov/pubmed/33837377
http://dx.doi.org/10.1038/s41591-021-01310-z
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