Cargando…

Capture-C: A modular and flexible approach for high-resolution chromosome conformation capture

Chromosome conformation capture (3C) methods measure the spatial proximity between DNA elements in the cell nucleus. Many methods have been developed to sample 3C material, including the Capture-C family of protocols. Capture-C methods use oligonucleotides to enrich for interactions of interest from...

Descripción completa

Detalles Bibliográficos
Autores principales:	Downes, Damien J., Smith, Alastair L., Karpinska, Magdalena A., Velychko, Taras, Rue-Albrecht, Kevin, Sims, David, Milne, Thomas A., Davies, James O.J., Oudelaar, A. Marieke, Hughes, Jim R.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	2022
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7613269/ https://www.ncbi.nlm.nih.gov/pubmed/35121852 http://dx.doi.org/10.1038/s41596-021-00651-w

Ejemplares similares

Robust detection of chromosomal interactions from small numbers of cells using low-input Capture-C
por: Oudelaar, A. Marieke, et al.
Publicado: (2017)

The Mediator complex regulates enhancer-promoter interactions
por: Ramasamy, Shyam, et al.
Publicado: (2023)

Functional Brain Network Modularity Captures Inter- and Intra-Individual Variation in Working Memory Capacity
por: Stevens, Alexander A., et al.
Publicado: (2012)

Capture‐C reveals preformed chromatin interactions between HIF‐binding sites and distant promoters
por: Platt, James L, et al.
Publicado: (2016)

The statistical-mechanics of chromosome conformation capture
por: O'Sullivan, Justin M, et al.
Publicado: (2013)

The macro and micro of chromosome conformation capture
por: Goel, Viraat Y., et al.
Publicado: (2020)

Systematic evaluation of chromosome conformation capture assays
por: Akgol Oksuz, Betul, et al.
Publicado: (2021)

Beyond Rotatable Bond Counts: Capturing 3D Conformational Flexibility in a Single Descriptor
por: Wicker, Jerome G. P., et al.
Publicado: (2016)

Actual Ligation Frequencies in the Chromosome Conformation Capture Procedure
por: Gavrilov, Alexey A., et al.
Publicado: (2013)

DOT1L inhibition reveals a distinct subset of enhancers dependent on H3K79 methylation
por: Godfrey, Laura, et al.
Publicado: (2019)

DeepC: predicting 3D genome folding using megabase-scale transfer learning
por: Schwessinger, Ron, et al.
Publicado: (2020)

Analysis of sub-kilobase chromatin topology reveals nano-scale regulatory interactions with variable dependence on cohesin and CTCF
por: Aljahani, Abrar, et al.
Publicado: (2022)

Characterization of chromosomal architecture in Arabidopsis by chromosome conformation capture
por: Grob, Stefan, et al.
Publicado: (2013)

A streamlined tethered chromosome conformation capture protocol
por: Gabdank, Idan, et al.
Publicado: (2016)

Capturing transient antibody conformations with DNA origami epitopes
por: Zhang, Ping, et al.
Publicado: (2020)

Investigation of the Basic Steps in the Chromosome Conformation Capture Procedure
por: Bylino, Oleg V., et al.
Publicado: (2021)

Exploiting native forces to capture chromosome conformation in mammalian cell nuclei
por: Brant, Lilija, et al.
Publicado: (2016)

A rapid simple approach to quantify chromosome conformation capture
por: Abou El Hassan, M., et al.
Publicado: (2009)

Identifying and Reducing Systematic Errors in Chromosome Conformation Capture Data
por: Hahn, Seungsoo, et al.
Publicado: (2015)

Capturing native interactions: intrinsic methods to study chromatin conformation
por: Rowley, M Jordan, et al.
Publicado: (2016)

A cautionary note on the use of chromosome conformation capture in plants
por: Jamge, Suraj, et al.
Publicado: (2017)

Cut-C: cleavage under tethered nuclease for conformational capture
por: Shimbo, Takashi, et al.
Publicado: (2019)

Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains
por: Oudelaar, A. Marieke, et al.
Publicado: (2018)

A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker
por: Bozhilov, Yavor K., et al.
Publicado: (2021)

Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo
por: Hanssen, Lars L P, et al.
Publicado: (2017)

Modular Biological Function Is Most Effectively Captured by Combining Molecular Interaction Data Types
por: Ames, Ryan M., et al.
Publicado: (2013)

Capturing Conformational States in Proteins Using Sparse Paramagnetic NMR Data
por: Pilla, Kala Bharath, et al.
Publicado: (2015)

Metagenomic Chromosome Conformation Capture (3C): techniques, applications, and challenges
por: Liu, Michael, et al.
Publicado: (2015)

Integrating multi-omic features exploiting Chromosome Conformation Capture data
por: Merelli, Ivan, et al.
Publicado: (2015)

Chromosome conformation capture assay combined with biotin enrichment for hyperthermophilic archaea
por: Takemata, Naomichi, et al.
Publicado: (2021)

Advantages of using graph databases to explore chromatin conformation capture experiments
por: D’Agostino, Daniele, et al.
Publicado: (2021)

Martini 3 Model of Cellulose Microfibrils: On the Route to Capture Large Conformational Changes of Polysaccharides
por: Moreira, Rodrigo A., et al.
Publicado: (2022)

Multiplexed analysis of chromosome conformation at vastly improved sensitivity
por: Davies, James O.J., et al.
Publicado: (2015)

Validation and implementation of a modular targeted capture assay for the detection of clinically significant molecular oncology alterations
por: Kuo, Ayako J., et al.
Publicado: (2020)

Video capture virtual reality as a flexible and effective rehabilitation tool
por: Weiss, Patrice L, et al.
Publicado: (2004)

Bapineuzumab captures the N-terminus of the Alzheimer's disease amyloid-beta peptide in a helical conformation
por: Miles, Luke A., et al.
Publicado: (2013)

3PD: Rapid design of optimal primers for chromosome conformation capture assays
por: Fröhler, Sebastian, et al.
Publicado: (2009)

Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription
por: Cagliero, Cedric, et al.
Publicado: (2013)

3CDB: a manually curated database of chromosome conformation capture data
por: Yun, Xiaoxiao, et al.
Publicado: (2016)

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet
por: Shi, Junpeng, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_bg0nqkvk7eb37c7sru97mdg559